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Published work

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  • Ajay Nadig, Paul K Reardon, Jakob Seidlitz, Cassidy L McDermott, Jonathan D Blumenthal, Liv S Clasen, Francois Lalonde, Jason P Lerch, M Mallar Chakravarty, and Armin Raznahan. Carriage of Supernumerary Sex Chromosomes Decreases the Volume and Alters the Shape of Limbic Structures.eNeuro, 5(5). (doi:10.1523/ENEURO.0265-18.2018)

  • Tejas Sankar, M Mallar Chakravarty, Agustin Bescos, Monica Lara, Toshiki Obuchi, Adrian W Laxton, Mary Pat McAndrews, David F Tang-Wai, Clifford I Workman, Gwenn S Smith, and Andres M Lozano. Deep Brain Stimulation Influences Brain Structure in Alzheimer's Disease. Brain Stimul, 8(3):645–54. (doi:10.1016/j.brs.2014.11.020)

  • Cecil M Y Chau, Manon Ranger, Mark Bichin, Min Tae M Park, Robert S C Amaral,Mallar Chakravarty, Kenneth Poskitt, Anne R Synnes, Steven P Miller, and Ruth E Grunau. Hippocampus, Amygdala, and Thalamus Volumes in Very Preterm Children at 8 Years: Neonatal Pain and Genetic Variation. Front Behav Neurosci, 13:51, 2019. (doi:10.3389/fnbeh.2019.00051)

  • Ting Guo, Vann Chau, Shabnam Peyvandi, Beatrice Latal, Patrick S McQuillen, Walter Knirsch, Anne Synnes, Maria Feldmann, Nadja Naef, M Mallar Chakravarty, Alessandra De Petrillo, Emma G Duerden, A James Barkovich, and Steven P Miller. White matter injury in term neonates with congenital heart diseases: Topology & comparison with preterm newborns. Neuroimage, 185:742–749, 01 2019. (doi:10.1016/j.neuroimage.2018.06.004)

  • Sarah Hirsiger, Jürgen Hänggi, Jürgen Germann, Matthias Vonmoos, Katrin H Preller, Etna J E Engeli, Matthias Kirschner, Caroline Reinhard, Lea M Hulka, Markus R Baumgartner, Mallar M Chakravarty, Erich Seifritz, Marcus Herdener, and Boris B Quednow. Longitudinal changes in cocaine intake and cognition are linked to cortical thickness adaptations in cocaine users. Neuroimage Clin, 21:101652, 2019. (doi:10.1016/j.nicl.2019.101652)

  • Colleen P E Rollins, Daniel Gallino, Vincent Kong, Gülebru Ayranci, Gabriel A Devenyi, Jürgen Germann, and M Mallar Chakravarty. Contributions of a high-fat diet to Alzheimer's disease-related decline: A longitudinal behavioural and structural neuroimaging study in mouse models. Neuroimage Clin, 21:101606, 2019. (doi:10.1016/j.nicl.2018.11.016)

  • Daniel Gallino, Gabriel A Devenyi, Jürgen Germann, Elisa Guma, Chloe Anastassiadis, and M Mallar Chakravarty. Longitudinal assessment of the neuroanatomical consequences of deep brain stimulation: Application of fornical DBS in an Alzheimer's mouse model. Brain Res., 1715:213–223, July 2019. (doi:10.1016/j.brainres.2019.03.030)

  • Kimberly Fontes, Charles V Rohlicek, Christine Saint-Martin, Guillaume Gilbert, Kaitlyn Easson, Annette Majnemer, Ariane Marelli, M Mallar Chakravarty, and Marie Brossard-Racine. Hippocampal alterations and functional correlates in adolescents and young adults with congenital heart disease. Hum Brain Mapp, May 2019. (doi:10.1002/hbm.24615)

  • Athina Papadopoulou, Laura Gaetano, Armanda Pfister, Anna Altermatt, Charidimos Tsagkas, Felix Morency, Alexander U Brandt, Martin Hardmeier,Mallar M Chakravarty, Maxime Descoteaux, Ludwig Kappos, Till Sprenger, and Stefano Magon. Damage of the lateral geniculate nucleus in MS: Assessing the missing node of the visual pathway. Neurology, 92(19):e2240–e2249, May 2019. (doi:10.1212/WNL.0000000000007450)

  • Emily W Y Tam, Vann Chau, Raphaël Lavoie, M Mallar Chakravarty, Ting Guo, Anne Synnes, Jill Zwicker, Ruth Grunau, and Steven P Miller. Neurologic Examination Findings Associated With Small Cerebellar Volumes After Prematurity. J. Child Neurol., page 883073819847925, May 2019. (doi:10.1177/0883073819847925)

  • Saashi A Bedford, Min Tae M Park, Gabriel A Devenyi, Stephanie Tullo, Jurgen Germann, Raihaan Patel, Evdokia Anagnostou, Simon Baron-Cohen, Edward T Bullmore, Lindsay R Chura, Michael C Craig, Christine Ecker, Dorothea L Floris, Rosemary J Holt, Rhoshel Lenroot, Jason P Lerch, Michael V Lombardo, Declan G M Murphy, Armin Raznahan, Amber N V Ruigrok, Elizabeth Smith, Michael D Spencer, John Suckling, Margot J Taylor, Audrey Thurm, , Meng-Chuan Lai, and M Mallar Chakravarty. Large-scale analyses of the relationship between sex, age and intelligence quotient heterogeneity and cortical morphometry in autism spectrum disorder. Mol. Psychiatry, April 2019. (doi:10.1038/s41380-019-0420-6)

  • Yoko Eguchi, Yoshihiro Noda, Shinichiro Nakajima, Sakiko Tsugawa, Hisashi Kida, Eric Plitman, Ariel Graff-Guerrero, Mallar M Chakravarty, Midori Takayama, Yasumichi Arai, Hiroshi Matsuda, Masaru Mimura, and Hidehito Niimura. Subiculum volumes associated with memory function in the oldest-old individuals aged 95 years and older. Geriatr Gerontol Int, 19(4):347–351, April 2019. (doi:10.1111/ggi.13614)

  • Sonja Stojanovski, Daniel Felsky, Joseph D Viviano, Saba Shahab, Rutwik Bangali, Christie L Burton, Gabriel A Devenyi, Lauren J O'Donnell, Peter Szatmari, M Mallar Chakravarty, Stephanie Ameis, Russell Schachar, Aristotle N Voineskos, and Anne L Wheeler. Polygenic Risk and Neural Substrates of Attention-Deficit/Hyperactivity Disorder Symptoms in Youths With a History of Mild Traumatic Brain Injury. Biol. Psychiatry, 85(5):408–416, March 2019. (doi:10.1016/j.biopsych.2018.06.024)

  • Nikhil Bhagwat, Jon Pipitone, Aristotle N. Voineskos, and M. Mallar Chakravarty and. An artificial neural network model for clinical score prediction in Alzheimer disease using structural neuroimaging measures. J Psychiatry Neurosci, 44(2):1–15, February 2019. (doi:10.1503/jpn.180016)

  • Sophie Béland, Carolina Makowski, Susanna Konsztowicz, Lisa Buchy, M Mallar Chakravarty, and Martin Lepage. Clarifying associations between cortical thickness, subcortical structures, and a comprehensive assessment of clinical insight in enduring schizophrenia. Schizophr. Res., 204:245–252, February 2019. (doi:10.1016/j.schres.2018.08.024)

  • Cassidy L McDermott, Jakob Seidlitz, Ajay Nadig, Siyuan Liu, Liv S Clasen, Jonathan D Blumenthal, Paul Kirkpatrick Reardon, François Lalonde, Deanna Greenstein, Raihaan Patel, M Mallar Chakravarty, Jason P Lerch, and Armin Raznahan. Longitudinally Mapping Childhood Socioeconomic Status Associations with Cortical and Subcortical Morphology. J. Neurosci., 39(8):1365–1373, February 2019. (doi:10.1523/JNEUROSCI.1808-18.2018)

  • Akihiro Takamiya, Eric Plitman, Jun Ku Chung, Mallar Chakravarty, Ariel Graff-Guerrero, Masaru Mimura, and Taishiro Kishimoto. Acute and long-term effects of electroconvulsive therapy on human dentate gyrus.Neuropsychopharmacology, January 2019. (doi:10.1038/s41386-019-0312-0)

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2019

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  • Robert S C Amaral, Min Tae M Park, Gabriel A Devenyi, Vivian Lynn, Jon Pipitone, Julie Winterburn, Sofia Chavez, Mark Schira, Nancy J Lobaugh, Aristotle N Voineskos, Jens C Pruessner, and M Mallar Chakravarty and. Manual segmentation of the fornix, fimbria, and alveus on high-resolution 3T MRI: Application via fully-automated mapping of the human memory circuit white and grey matter in healthy and pathological aging. Neuroimage, 170:132–150, 04 2018. (doi:10.1016/j.neuroimage.2016.10.027)

  • Nikhil Bhagwat, Joseph D Viviano, Aristotle N Voineskos, andM Mallar Chakravarty and. Modeling and prediction of clinical symptom trajectories in Alzheimer's disease using longitudinal data. PLoS Comput. Biol., 14(9):e1006376, 09 2018. (doi:10.1371/journal.pcbi.1006376)

  • Fernando Caravaggio, Gagan Fervaha, Yusuke Iwata, Eric Plitman, Jun Ku Chung, Shinichiro Nakajima, Wanna Mar, Philip Gerretsen, Julia Kim, M Mallar Chakravarty, Benoit Mulsant, Bruce Pollock, David Mamo, Gary Remington, and Ariel Graff-Guerrero. Amotivation is associated with smaller ventral striatum volumes in older patients with schizophrenia. Int J Geriatr Psychiatry, 33(3):523–530, 03 2018. (doi:10.1002/gps.4818)

  • Fernando Caravaggio, Pontus Plavén-Sigray, Granville James Matheson, Eric Plitman, M Mallar Chakravarty, Jacqueline Borg, Ariel Graff-Guerrero, and Simon Cervenka. Trait impulsivity is not related to post-commissural putamen volumes: A replication study in healthy men. PLoS ONE, 13(12):e0209584, 2018. (doi:10.1371/journal.pone.0209584)

  • Louisa Dahmani, Raihaan M Patel, Yiling Yang, M Mallar Chakravarty, Lesley K Fellows, and Véronique D Bohbot. An intrinsic association between olfactory identification and spatial memory in humans. Nat Commun, 9(1):4162, 10 2018. (doi:10.1038/s41467-018-06569-4)

  • Emma G Duerden, Ruth E Grunau, Ting Guo, Justin Foong, Alexander Pearson, Stephanie Au-Young, Raphael Lavoie, M Mallar Chakravarty, Vann Chau, Anne Synnes, and Steven P Miller. Early Procedural Pain Is Associated with Regionally-Specific Alterations in Thalamic Development in Preterm Neonates.J. Neurosci., 38(4):878–886, 01 2018. (doi:10.1523/JNEUROSCI.0867-17.2017)

  • Siobhan Ewert, Philip Plettig, Ningfei Li, M Mallar Chakravarty, D Louis Collins, Todd M Herrington, Andrea A Kühn, and Andreas Horn. Toward defining deep brain stimulation targets in MNI space: A subcortical atlas based on multimodal MRI, histology and structural connectivity. Neuroimage, 170:271–282, 04 2018. (doi:10.1016/j.neuroimage.2017.05.015)

  • Elisa Guma, Jill Rocchetti, Gabriel A Devenyi, Arnaud Tanti, Axel Mathieu, Jason P Lerch, Guillaume Elgbeili, Blandine Courcot, Naguib Mechawar,M Mallar Chakravarty, and Bruno Giros. Regional brain volume changes following chronic antipsychotic administration are mediated by the dopamine D2 receptor. Neuroimage, 176:226–238, 08 2018. (doi:10.1016/j.neuroimage.2018.04.054)

  • Sina Hafizi, Elisa Guma, Alex Koppel, Tania Da Silva, Michael Kiang, Sylvain Houle, Alan A Wilson, Pablo M Rusjan, M Mallar Chakravarty, and Romina Mizrahi. TSPO expression and brain structure in the psychosis spectrum. Brain Behav. Immun., 74:79–85, 11 2018. (doi:10.1016/j.bbi.2018.06.009)

  • Kyoko Konishi, Ridha Joober, Judes Poirier, Kathleen MacDonald, Mallar Chakravarty, Raihaan Patel, John Breitner, and Véronique D Bohbot. Healthy versus Entorhinal Cortical Atrophy Identification in Asymptomatic APOE4 Carriers at Risk for Alzheimer's Disease. J. Alzheimers Dis., 61(4):1493–1507, 2018. (doi:10.3233/JAD-170540)

  • Jeannie-Marie S Leoutsakos, Haijuan Yan, William S Anderson, Wael F Asaad, Gordon Baltuch, Anna Burke, M Mallar Chakravarty, Kristen E Drake, Kelly D Foote, Lisa Fosdick, Peter Giacobbe, Zoltan Mari, Mary Pat McAndrews, Cynthia A Munro, Esther S Oh, Michael S Okun, Jo Cara Pendergrass, Francisco A Ponce, Paul B Rosenberg, Marwan N Sabbagh, Stephen Salloway, David F Tang-Wai, Steven D Targum, David Wolk, Andres M Lozano, Gwenn S Smith, and Constantine G Lyketsos. Deep Brain Stimulation Targeting the Fornix for Mild Alzheimer Dementia (the ADvance Trial): A Two Year Follow-up Including Results of Delayed Activation. J. Alzheimers Dis., 64(2):597–606, 2018. (doi:10.3233/JAD-180121)

  • Carolina Makowski, Sophie Béland, Penelope Kostopoulos, Nikhil Bhagwat, Gabriel A Devenyi, Ashok K Malla, Ridha Joober, Martin Lepage, and M Mallar Chakravarty. Evaluating accuracy of striatal, pallidal, and thalamic segmentation methods: Comparing automated approaches to manual delineation. Neuroimage, 170:182–198, 04 2018. (doi:10.1016/j.neuroimage.2017.02.069)

  • Md Taufiq Nasseef, Gabriel A Devenyi, Anna E Mechling, Laura-Adela Harsan,M Mallar Chakravarty, Brigitte Lina Kieffer, and Emmanuel Darcq. Deformation-based Morphometry MRI Reveals Brain Structural Modifications in Living Mu Opioid Receptor Knockout Mice. Front Psychiatry, 9:643, 2018. (doi:10.3389/fpsyt.2018.00643)

  • Sejal Patel, Raihaan Patel, Min Tae M Park, Mario Masellis, Jo Knight, andM Mallar Chakravarty. Heritability estimates of cortical anatomy: The influence and reliability of different estimation strategies. Neuroimage, 178:78–91, 09 2018. (doi:10.1016/j.neuroimage.2018.05.014)

  • Eric Plitman, Sofia Chavez, Shinichiro Nakajima, Yusuke Iwata, Jun Ku Chung, Fernando Caravaggio, Julia Kim, Youssef Alshehri, M Mallar Chakravarty, Vincenzo De Luca, Gary Remington, Philip Gerretsen, and Ariel Graff-Guerrero. Striatal neurometabolite levels in patients with schizophrenia undergoing long-term antipsychotic treatment: A proton magnetic resonance spectroscopy and reliability study. Psychiatry Res Neuroimaging, 273:16–24, 03 2018. (doi:10.1016/j.pscychresns.2018.01.004)

  • P K Reardon, Jakob Seidlitz, Simon Vandekar, Siyuan Liu, Raihaan Patel, Min Tae M Park, Aaron Alexander-Bloch, Liv S Clasen, Jonathan D Blumenthal, Francois M Lalonde, Jay N Giedd, Ruben C Gur, Raquel E Gur, Jason P Lerch,M Mallar Chakravarty, Theodore D Satterthwaite, Russell T Shinohara, and Armin Raznahan. Normative brain size variation and brain shape diversity in humans. Science, 360(6394):1222–1227, 06 2018. (doi:10.1126/science.aar2578)

  • Juliane Schneider, Emma G Duerden, Ting Guo, Karin Ng, Patric Hagmann, Myriam Bickle Graz, Ruth E Grunau, M Mallar Chakravarty, Petra S Hüppi, Anita C Truttmann, and Steven P Miller. Procedural pain and oral glucose in preterm neonates: brain development and sex-specific effects. Pain, 159(3):515–525, 03 2018. (doi:10.1097/j.pain.0000000000001123)

  • Juliane Schneider, Céline J Fischer Fumeaux, Emma G Duerden, Ting Guo, Justin Foong, Myriam Bickle Graz, Patric Hagmann, M Mallar Chakravarty, Petra S Hüppi, Lydie Beauport, Anita C Truttmann, and Steven P Miller. Nutrient Intake in the First Two Weeks of Life and Brain Growth in Preterm Neonates. Pediatrics, 141(3), 03 2018. (doi:10.1542/peds.2017-2169)

  • Dorothee Schoemaker, Claudia Buss, Kevin Head, Curt A Sandman, Elysia P Davis, M Mallar Chakravarty, Serge Gauthier, and Jens C Pruessner. Corrigendum to "Hippocampus and amygdala volumes from magnetic resonance images in children: Assessing accuracy of FreeSurfer and FSL against manual segmentation"[NeuroImage 129 (2016) 1-14]. Neuroimage, 173:1–2, 06 2018. (doi:10.1016/j.neuroimage.2018.02.009)

  • Christopher J Steele and M Mallar Chakravarty. Gray-matter structural variability in the human cerebellum: Lobule-specific differences across sex and hemisphere. Neuroimage, 170:164–173, 04 2018. (doi:10.1016/j.neuroimage.2017.04.066)

  • Christine L Tardif, Gabriel A Devenyi, Robert S C Amaral, Sandra Pelleieux, Judes Poirier, Pedro Rosa-Neto, John Breitner, and M Mallar Chakravarty and. Regionally specific changes in the hippocampal circuitry accompany progression of cerebrospinal fluid biomarkers in preclinical Alzheimer's disease.Hum Brain Mapp, 39(2):971–984, 02 2018. (doi:10.1002/hbm.23897)

  • Stephanie Tullo, Gabriel A Devenyi, Raihaan Patel, Min Tae M Park, D Louis Collins, and M Mallar Chakravarty. Warping an atlas derived from serial histology to 5 high-resolution MRIs. Sci Data, 5:180107, 06 2018. (doi:10.1038/sdata.2018.107)

  • Anne L Wheeler, Daniel Felsky, Joseph D Viviano, Sonja Stojanovski, Stephanie H Ameis, Peter Szatmari, Jason P Lerch, M Mallar Chakravarty, and Aristotle N Voineskos. BDNF-Dependent Effects on Amygdala-Cortical Circuitry and Depression Risk in Children and Youth. Cereb. Cortex, 28(5):1760–1770, 05 2018. (doi:10.1093/cercor/bhx086)

  • Alexandre Boutet, Manish Ranjan, Jidan Zhong, Jurgen Germann, David Xu, Michael L Schwartz, Nir Lipsman, Kullervo Hynynen, Gabriel A Devenyi, Mallar Chakravarty, Eugen Hlasny, Maheleth Llinas, Christopher S Lozano, Gavin J B Elias, Jason Chan, Ailish Coblentz, Alfonso Fasano, Walter Kucharczyk, Mojgan Hodaie, and Andres M Lozano. Focused ultrasound thalamotomy location determines clinical benefits in patients with essential tremor. Brain, 141(12):3405–3414, December 2018. (doi:10.1093/brain/awy278)

  • Cassandra M J Wannan, Vanessa L Cropley, M Mallar Chakravarty, Tamsyn E Van Rheenen, Sam Mancuso, Chad Bousman, Ian Everall, Patrick D McGorry, Christos Pantelis, and Cali F Bartholomeusz. Hippocampal subfields and visuospatial associative memory across stages of schizophrenia-spectrum disorder. Psychol Med, pages 1–11, December 2018. (doi:10.1017/S0033291718003458)

  • Angela Guadagno, Min Su Kang, Gabriel A Devenyi, Axel P Mathieu, Pedro Rosa-Neto, Mallar Chakravarty, and Claire-Dominique Walker. Reduced resting-state functional connectivity of the basolateral amygdala to the medial prefrontal cortex in preweaning rats exposed to chronic early-life stress. Brain Struct Funct, 223(8):3711–3729, November 2018. (doi:10.1007/s00429-018-1720-3)

  • Philip Shaw, Ayaka Ishii-Takahashi, Min Tae Park, Gabriel A Devenyi, Chava Zibman, Steven Kasparek, Gustavo Sudre, Aman Mangalmurti, Martine Hoogman, Henning Tiemeier, Georg von Polier, Devon Shook, Ryan Muetzel,M Mallar Chakravarty, Kerstin Konrad, Sarah Durston, and Tonya White. A multicohort, longitudinal study of cerebellar development in attention deficit hyperactivity disorder. J Child Psychol Psychiatry, 59(10):1114–1123, October 2018. (doi:10.1111/jcpp.12920)

  • Vincent Kong, Gabriel A Devenyi, Daniel Gallino, Gülebru Ayranci, Jürgen Germann, Colleen Rollins, and M Mallar Chakravarty. Early-in-life neuroanatomical and behavioural trajectories in a triple transgenic model of Alzheimer's disease. Brain Struct Funct, 223(7):3365–3382, September 2018. (doi:10.1007/s00429-018-1691-4)

  • Min Tae M Park, Armin Raznahan, Philip Shaw, Nitin Gogtay, Jason P Lerch, andM Mallar Chakravarty. Neuroanatomical phenotypes in mental illness: identifying convergent and divergent cortical phenotypes across autism, ADHD and schizophrenia. J Psychiatry Neurosci, 43(3):201–212, May 2018.

  • Min Tae M Park, Armin Raznahan, Philip Shaw, Nitin Gogtay, Jason P Lerch, andM Mallar Chakravarty. Neuroanatomical phenotypes in mental illness: identifying convergent and divergent cortical phenotypes across autism, ADHD and schizophrenia. J Psychiatry Neurosci, 43(2):170094, February 2018. (doi:10.1503/jpn.170094)

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2018

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  • Fernando Caravaggio, Jun Ku Chung, Eric Plitman, Isabelle Boileau, Philip Gerretsen, Julia Kim, Yusuke Iwata, Raihaan Patel, M Mallar Chakravarty, Gary Remington, and Ariel Graff-Guerrero. The relationship between subcortical brain volume and striatal dopamine D2/3 receptor availability in healthy humans assessed with [11 C]-raclopride and [11 C]-(+)-PHNO PET. Hum Brain Mapp, 38(11):5519–5534, 11 2017. (doi:10.1002/hbm.23744)

  • Jun Ku Chung, Eric Plitman, Shinichiro Nakajima, Fernando Caravaggio, Yusuke Iwata, Philip Gerretsen, Julia Kim, Hiroyoshi Takeuchi, Shunichiro Shinagawa, Raihaan Patel, M Mallar Chakravarty, and Ariel Graff-Guerrero and. Hippocampal and Clinical Trajectories of Mild Cognitive Impairment with Suspected Non-Alzheimer's Disease Pathology. J. Alzheimers Dis., 58(3):747–762, 2017. (doi:10.3233/JAD-170201)

  • Jun Ku Chung, Eric Plitman, Shinichiro Nakajima, Fernando Caravaggio, Shunichiro Shinagawa, Yusuke Iwata, Philip Gerretsen, Julia Kim, Hiroyoshi Takeuchi, Raihaan Patel, M Mallar Chakravarty, Antonio Strafella, and Ariel Graff-Guerrero and. The Effects of Cortical Hypometabolism and Hippocampal Atrophy on Clinical Trajectories in Mild Cognitive Impairment with Suspected Non-Alzheimer's Pathology: A Brief Report. J. Alzheimers Dis., 60(2):341–347, 2017. (doi:10.3233/JAD-170098)

  • Alexandra L Decker, Kamila U Szulc, Eric Bouffet, Suzanne Laughlin, M Mallar Chakravarty, Jovanka Skocic, Cynthia B de Medeiros, and Donald J Mabbott. Smaller hippocampal subfield volumes predict verbal associative memory in pediatric brain tumor survivors. Hippocampus, 27(11):1140–1154, 11 2017. (doi:10.1002/hipo.22758)

  • Krzysztof J Gorgolewski, Fidel Alfaro-Almagro, Tibor Auer, Pierre Bellec, Mihai Capotă, M Mallar Chakravarty, Nathan W Churchill, Alexander Li Cohen, R Cameron Craddock, Gabriel A Devenyi, Anders Eklund, Oscar Esteban, Guillaume Flandin, Satrajit S Ghosh, J Swaroop Guntupalli, Mark Jenkinson, Anisha Keshavan, Gregory Kiar, Franziskus Liem, Pradeep Reddy Raamana, David Raffelt, Christopher J Steele, Pierre-Olivier Quirion, Robert E Smith, Stephen C Strother, Gaël Varoquaux, Yida Wang, Tal Yarkoni, and Russell A Poldrack. BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. PLoS Comput. Biol., 13(3):e1005209, 03 2017. (doi:10.1371/journal.pcbi.1005209)

  • Elisa Guma, Gabriel A Devenyi, Ashok Malla, Jai Shah, M Mallar Chakravarty, and Marita Pruessner. Neuroanatomical and Symptomatic Sex Differences in Individuals at Clinical High Risk for Psychosis. Front Psychiatry, 8:291, 2017. (doi:10.3389/fpsyt.2017.00291)

  • Colin Hawco, Jorge L Armony, Zafiris J Daskalakis, Marcelo T Berlim, M Mallar Chakravarty, G Bruce Pike, and Martin Lepage. Differing Time of Onset of Concurrent TMS-fMRI during Associative Memory Encoding: A Measure of Dynamic Connectivity. Front Hum Neurosci, 11:404, 2017. (doi:10.3389/fnhum.2017.00404)

  • Derrek P Hibar, Hieab H H Adams, Neda Jahanshad, Ganesh Chauhan, Jason L Stein, Edith Hofer, Miguel E Renteria, Joshua C Bis, Alejandro Arias-Vasquez, M Kamran Ikram, Sylvane Desrivières, Meike W Vernooij, Lucija Abramovic, Saud Alhusaini, Najaf Amin, Micael Andersson, Konstantinos Arfanakis, Benjamin S Aribisala, Nicola J Armstrong, Lavinia Athanasiu, Tomas Axelsson, Ashley H Beecham, Alexa Beiser, Manon Bernard, Susan H Blanton, Marc M Bohlken, Marco P Boks, Janita Bralten, Adam M Brickman, Owen Carmichael,M Mallar Chakravarty, Qiang Chen, Christopher R K Ching, Vincent Chouraki, Gabriel Cuellar-Partida, Fabrice Crivello, Anouk Den Braber, Nhat Trung Doan, Stefan Ehrlich, Sudheer Giddaluru, Aaron L Goldman, Rebecca F Gottesman, Oliver Grimm, Michael E Griswold, Tulio Guadalupe, Boris A Gutman, Johanna Hass, Unn K Haukvik, David Hoehn, Avram J Holmes, Martine Hoogman, Deborah Janowitz, Tianye Jia, Kjetil N Jørgensen, Nazanin Karbalai, Dalia Kasperaviciute, Sungeun Kim, Marieke Klein, Bernd Kraemer, Phil H Lee, David C M Liewald, Lorna M Lopez, Michelle Luciano, Christine Macare, Andre F Marquand, Mar Matarin, Karen A Mather, Manuel Mattheisen, David R McKay, Yuri Milaneschi, Susana Muñoz Maniega, Kwangsik Nho, Allison C Nugent, Paul Nyquist, Loes M Olde Loohuis, Jaap Oosterlaan, Martina Papmeyer, Lukas Pirpamer, Benno Pütz, Adaikalavan Ramasamy, Jennifer S Richards, Shannon L Risacher, Roberto Roiz-Santiañez, Nanda Rommelse, Stefan Ropele, Emma J Rose, Natalie A Royle, Tatjana Rundek, Philipp G Sämann, Arvin Saremi, Claudia L Satizabal, Lianne Schmaal, Andrew J Schork, Li Shen, Jean Shin, Elena Shumskaya, Albert V Smith, Emma Sprooten, Lachlan T Strike, Alexander Teumer, Diana Tordesillas-Gutierrez, Roberto Toro, Daniah Trabzuni, Stella Trompet, Dhananjay Vaidya, Jeroen Van der Grond, Sven J Van der Lee, Dennis Van der Meer, Marjolein M J Van Donkelaar, Kristel R Van Eijk, Theo G M Van Erp, Daan Van Rooij, Esther Walton, Lars T Westlye, Christopher D Whelan, Beverly G Windham, Anderson M Winkler, Katharina Wittfeld, Girma Woldehawariat, Christiane Wolf, Thomas Wolfers, Lisa R Yanek, Jingyun Yang, Alex Zijdenbos, Marcel P Zwiers, Ingrid Agartz, Laura Almasy, David Ames, Philippe Amouyel, Ole A Andreassen, Sampath Arepalli, Amelia A Assareh, Sandra Barral, Mark E Bastin, Diane M Becker, James T Becker, David A Bennett, John Blangero, Hans van Bokhoven, Dorret I Boomsma, Henry Brodaty, Rachel M Brouwer, Han G Brunner, Randy L Buckner, Jan K Buitelaar, Kazima B Bulayeva, Wiepke Cahn, Vince D Calhoun, Dara M Cannon, Gianpiero L Cavalleri, Ching-Yu Cheng, Sven Cichon, Mark R Cookson, Aiden Corvin, Benedicto Crespo-Facorro, Joanne E Curran, Michael Czisch, Anders M Dale, Gareth E Davies, Anton J M De Craen, Eco J C De Geus, Philip L De Jager, Greig I De Zubicaray, Ian J Deary, Stéphanie Debette, Charles DeCarli, Norman Delanty, Chantal Depondt, Anita DeStefano, Allissa Dillman, Srdjan Djurovic, Gary Donohoe, Wayne C Drevets, Ravi Duggirala, Thomas D Dyer, Christian Enzinger, Susanne Erk, Thomas Espeseth, Iryna O Fedko, Guillén Fernández, Luigi Ferrucci, Simon E Fisher, Debra A Fleischman, Ian Ford, Myriam Fornage, Tatiana M Foroud, Peter T Fox, Clyde Francks, Masaki Fukunaga, J Raphael Gibbs, David C Glahn, Randy L Gollub, Harald H H Göring, Robert C Green, Oliver Gruber, Vilmundur Gudnason, Sebastian Guelfi, Asta K Håberg, Narelle K Hansell, John Hardy, Catharina A Hartman, Ryota Hashimoto, Katrin Hegenscheid, Andreas Heinz, Stephanie Le Hellard, Dena G Hernandez, Dirk J Heslenfeld, Beng-Choon Ho, Pieter J Hoekstra, Wolfgang Hoffmann, Albert Hofman, Florian Holsboer, Georg Homuth, Norbert Hosten, Jouke-Jan Hottenga, Matthew Huentelman, Hilleke E Hulshoff Pol, Masashi Ikeda, Clifford R Jack, Mark Jenkinson, Robert Johnson, Erik G Jönsson, J Wouter Jukema, René S Kahn, Ryota Kanai, Iwona Kloszewska, David S Knopman, Peter Kochunov, John B Kwok, Stephen M Lawrie, Hervé Lemaître, Xinmin Liu, Dan L Longo, Oscar L Lopez, Simon Lovestone, Oliver Martinez, Jean-Luc Martinot, Venkata S Mattay, Colm McDonald, Andrew M McIntosh, Francis J McMahon, Katie L McMahon, Patrizia Mecocci, Ingrid Melle, Andreas Meyer-Lindenberg, Sebastian Mohnke, Grant W Montgomery, Derek W Morris, Thomas H Mosley, Thomas W Mühleisen, Bertram Müller-Myhsok, Michael A Nalls, Matthias Nauck, Thomas E Nichols, Wiro J Niessen, Markus M Nöthen, Lars Nyberg, Kazutaka Ohi, Rene L Olvera, Roel A Ophoff, Massimo Pandolfo, Tomas Paus, Zdenka Pausova, Brenda W J H Penninx, G Bruce Pike, Steven G Potkin, Bruce M Psaty, Simone Reppermund, Marcella Rietschel, Joshua L Roffman, Nina Romanczuk-Seiferth, Jerome I Rotter, Mina Ryten, Ralph L Sacco, Perminder S Sachdev, Andrew J Saykin, Reinhold Schmidt, Helena Schmidt, Peter R Schofield, Sigurdur Sigursson, Andrew Simmons, Andrew Singleton, Sanjay M Sisodiya, Colin Smith, Jordan W Smoller, Hilkka Soininen, Vidar M Steen, David J Stott, Jessika E Sussmann, Anbupalam Thalamuthu, Arthur W Toga, Bryan J Traynor, Juan Troncoso, Magda Tsolaki, Christophe Tzourio, Andre G Uitterlinden, Maria C Valdés Hernández, Marcel Van der Brug, Aad van der Lugt, Nic J A van der Wee, Neeltje E M Van Haren, Dennis van 't Ent, Marie-Jose Van Tol, Badri N Vardarajan, Bruno Vellas, Dick J Veltman, Henry Völzke, Henrik Walter, Joanna M Wardlaw, Thomas H Wassink, Michael E Weale, Daniel R Weinberger, Michael W Weiner, Wei Wen, Eric Westman, Tonya White, Tien Y Wong, Clinton B Wright, Ronald H Zielke, Alan B Zonderman, Nicholas G Martin, Cornelia M Van Duijn, Margaret J Wright, W T Longstreth, Gunter Schumann, Hans J Grabe, Barbara Franke, Lenore J Launer, Sarah E Medland, Sudha Seshadri, Paul M Thompson, and M Arfan Ikram. Novel genetic loci associated with hippocampal volume. Nat Commun, 8:13624, 01 2017. (doi:10.1038/ncomms13624)

  • Nathan J Kolla, Raihaan Patel, Jeffrey H Meyer, and M Mallar Chakravarty. Association of monoamine oxidase-A genetic variants and amygdala morphology in violent offenders with antisocial personality disorder and high psychopathic traits. Sci Rep, 7(1):9607, 08 2017. (doi:10.1038/s41598-017-08351-w)

  • Andrea M Kälin, Min T M Park, M Mallar Chakravarty, Jason P Lerch, Lars Michels, Clemens Schroeder, Sarah D Broicher, Spyros Kollias, Roger M Nitsch, Anton F Gietl, Paul G Unschuld, Christoph Hock, and Sandra E Leh. Subcortical Shape Changes, Hippocampal Atrophy and Cortical Thinning in Future Alzheimer's Disease Patients. Front Aging Neurosci, 9:38, 2017. (doi:10.3389/fnagi.2017.00038)

  • Charles Laidi, Jennifer Boisgontier, M Mallar Chakravarty, Sevan Hotier, Marc-Antoine d'Albis, Jean-François Mangin, Gabriel A Devenyi, Richard Delorme, Federico Bolognani, Christian Czech, Céline Bouquet, Elie Toledano, Manuel Bouvard, Doriane Gras, Julie Petit, Marina Mishchenko, Alexandru Gaman, Isabelle Scheid, Marion Leboyer, Tiziana Zalla, and Josselin Houenou. Cerebellar anatomical alterations and attention to eyes in autism. Sci Rep, 7(1):12008, 09 2017. (doi:10.1038/s41598-017-11883-w)

  • Tristram A Lett, Lea Waller, Heike Tost, Ilya M Veer, Arash Nazeri, Susanne Erk, Eva J Brandl, Katrin Charlet, Anne Beck, Sabine Vollstädt-Klein, Anne Jorde, Falk Kiefer, Andreas Heinz, Andreas Meyer-Lindenberg, M Mallar Chakravarty, and Henrik Walter. Cortical surface-based threshold-free cluster enhancement and cortexwise mediation. Hum Brain Mapp, 38(6):2795–2807, 06 2017. (doi:10.1002/hbm.23563)

  • Catherine Mankiw, Min Tae M Park, P K Reardon, Ari M Fish, Liv S Clasen, Deanna Greenstein, Jay N Giedd, Jonathan D Blumenthal, Jason P Lerch, M Mallar Chakravarty, and Armin Raznahan. Allometric Analysis Detects Brain Size-Independent Effects of Sex and Sex Chromosome Complement on Human Cerebellar Organization. J. Neurosci., 37(21):5221–5231, 05 2017. (doi:10.1523/JNEUROSCI.2158-16.2017)

  • Sejal Patel, Min Tae M Park, Gabriel A Devenyi, Raihaan Patel, Mario Masellis, Jo Knight, and M Mallar Chakravarty. Heritability of hippocampal subfield volumes using a twin and non-twin siblings design. Hum Brain Mapp, 38(9):4337–4352, 09 2017. (doi:10.1002/hbm.23654)

  • Eric Plitman, Yusuke Iwata, Fernando Caravaggio, Shinichiro Nakajima, Jun Ku Chung, Philip Gerretsen, Julia Kim, Hiroyoshi Takeuchi, M Mallar Chakravarty, Gary Remington, and Ariel Graff-Guerrero. Kynurenic Acid in Schizophrenia: A Systematic Review and Meta-analysis. Schizophr Bull, 43(4):764–777, 07 2017. (doi:10.1093/schbul/sbw221)

  • Jose E Romero, Pierrick Coupé, Rémi Giraud, Vinh-Thong Ta, Vladimir Fonov, Min Tae M Park, M Mallar Chakravarty, Aristotle N Voineskos, and Jose V Manjón. CERES: A new cerebellum lobule segmentation method. Neuroimage, 147:916–924, 02 2017. (doi:10.1016/j.neuroimage.2016.11.003)

  • Tejas Sankar, Min Tae M Park, Tasha Jawa, Raihaan Patel, Nikhil Bhagwat, Aristotle N Voineskos, Andres M Lozano, and M Mallar Chakravarty and. Your algorithm might think the hippocampus grows in Alzheimer's disease: Caveats of longitudinal automated hippocampal volumetry. Hum Brain Mapp, 38(6):2875–2896, 06 2017. (doi:10.1002/hbm.23559)

  • Clemens Schroeder, Min Tae M Park, Jürgen Germann, M Mallar Chakravarty, Lars Michels, Spyros Kollias, Sara L Kroll, Alfred Buck, Valerie Treyer, Egemen Savaskan, Paul G Unschuld, Roger M Nitsch, Andrea M Kälin, Christoph Hock, Anton F Gietl, and Sandra E Leh. Hippocampal shape alterations are associated with regional Aβ load in cognitively normal elderly individuals. Eur. J. Neurosci., 45(10):1241–1251, 05 2017. (doi:10.1111/ejn.13408)

  • Joseph J Shenker, Sarojini M Sengupta, Ridha Joober, Ashok Malla, M Mallar Chakravarty, and Martin Lepage. Bipolar disorder risk gene FOXO6 modulates negative symptoms in schizophrenia: a neuroimaging genetics study. J Psychiatry Neurosci, 42(3):172–180, 05 2017.

  • Dafna Sussman, Leodante da Costa, Mallar M Chakravarty, Elizabeth W Pang, Margot J Taylor, and Benjamin T Dunkley. Concussion induces focal and widespread neuromorphological changes. Neurosci. Lett., 650:52–59, 05 2017. (doi:10.1016/j.neulet.2017.04.026)

  • Laura E M Wisse, Ana M Daugherty, Rosanna K Olsen, David Berron, Valerie A Carr, Craig E L Stark, Robert S C Amaral, Katrin Amunts, Jean C Augustinack, Andrew R Bender, Jeffrey D Bernstein, Marina Boccardi, Martina Bocchetta, Alison Burggren, M Mallar Chakravarty, Marie Chupin, Arne Ekstrom, Robin de Flores, Ricardo Insausti, Prabesh Kanel, Olga Kedo, Kristen M Kennedy, Geoffrey A Kerchner, Karen F LaRocque, Xiuwen Liu, Anne Maass, Nicolai Malykhin, Susanne G Mueller, Noa Ofen, Daniela J Palombo, Mansi B Parekh, John B Pluta, Jens C Pruessner, Naftali Raz, Karen M Rodrigue, Dorothee Schoemaker, Andrea T Shafer, Trevor A Steve, Nanthia Suthana, Lei Wang, Julie L Winterburn, Michael A Yassa, Paul A Yushkevich, and Renaud la Joie and. A harmonized segmentation protocol for hippocampal and parahippocampal subregions: Why do we need one and what are the key goals? Hippocampus, 27(1):3–11, 01 2017. (doi:10.1002/hipo.22671)

  • Julie L Winterburn, Aristotle N Voineskos, Gabriel A Devenyi, Eric Plitman, Camilo de la Fuente-Sandoval, Nikhil Bhagwat, Ariel Graff-Guerrero, Jo Knight, and M Mallar Chakravarty. Can we accurately classify schizophrenia patients from healthy controls using magnetic resonance imaging and machine learning? A multi-method and multi-dataset study. Schizophr. Res., December 2017. (doi:10.1016/j.schres.2017.11.038)

  • Fernando Caravaggio, Eric Plitman, Jun Ku Chung, Philip Gerretsen, Julia Kim, Yusuke Iwata, Mallar Chakravarty, Gary Remington, and Ariel Graff-Guerrero. Trait impulsiveness is related to smaller post-commissural putamen volumes in males but not females. Eur. J. Neurosci., 46(7):2253–2264, October 2017. (doi:10.1111/ejn.13661)

  • Fernando Caravaggio, Philip Gerretsen, Wanna Mar, Jun Ku Chung, Eric Plitman, Shinichiro Nakajima, Julia Kim, Yusuke Iwata, Raihaan Patel, M Mallar Chakravarty, Gary Remington, Ariel Graff-Guerrero, and Mahesh Menon. Intranasal oxytocin does not modulate jumping to conclusions in schizophrenia: Potential interactions with caudate volume and baseline social functioning. Psychoneuroendocrinology, 81:80–87, July 2017. (doi:10.1016/j.psyneuen.2017.03.020)

  • Yiming Xiao, Vladimir Fonov, M Mallar Chakravarty, Silvain Beriault, Fahd Al Subaie, Abbas Sadikot, G Bruce Pike, Gilles Bertrand, and D Louis Collins. A dataset of multi-contrast population-averaged brain MRI atlases of a Parkinson׳s disease cohort. Data Brief, 12:370–379, June 2017. (doi:10.1016/j.dib.2017.04.013)

  • Ting Guo, Emma G Duerden, Elysia Adams, Vann Chau, Helen M Branson,M Mallar Chakravarty, Kenneth J Poskitt, Anne Synnes, Ruth E Grunau, and Steven P Miller. Quantitative assessment of white matter injury in preterm neonates: Association with outcomes. Neurology, 88(7):614–622, February 2017. (doi:10.1212/WNL.0000000000003606)

​

2017

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  • Hieab H H Adams, Derrek P Hibar, Vincent Chouraki, Jason L Stein, Paul A Nyquist, Miguel E Rentería, Stella Trompet, Alejandro Arias-Vasquez, Sudha Seshadri, Sylvane Desrivières, Ashley H Beecham, Neda Jahanshad, Katharina Wittfeld, Sven J Van der Lee, Lucija Abramovic, Saud Alhusaini, Najaf Amin, Micael Andersson, Konstantinos Arfanakis, Benjamin S Aribisala, Nicola J Armstrong, Lavinia Athanasiu, Tomas Axelsson, Alexa Beiser, Manon Bernard, Joshua C Bis, Laura M E Blanken, Susan H Blanton, Marc M Bohlken, Marco P Boks, Janita Bralten, Adam M Brickman, Owen Carmichael, M Mallar Chakravarty, Ganesh Chauhan, Qiang Chen, Christopher R K Ching, Gabriel Cuellar-Partida, Anouk Den Braber, Nhat Trung Doan, Stefan Ehrlich, Irina Filippi, Tian Ge, Sudheer Giddaluru, Aaron L Goldman, Rebecca F Gottesman, Corina U Greven, Oliver Grimm, Michael E Griswold, Tulio Guadalupe, Johanna Hass, Unn K Haukvik, Saima Hilal, Edith Hofer, David Hoehn, Avram J Holmes, Martine Hoogman, Deborah Janowitz, Tianye Jia, Dalia Kasperaviciute, Sungeun Kim, Marieke Klein, Bernd Kraemer, Phil H Lee, Jiemin Liao, David C M Liewald, Lorna M Lopez, Michelle Luciano, Christine Macare, Andre Marquand, Mar Matarin, Karen A Mather, Manuel Mattheisen, Bernard Mazoyer, David R McKay, Rebekah McWhirter, Yuri Milaneschi, Nazanin Mirza-Schreiber, Ryan L Muetzel, Susana Muñoz Maniega, Kwangsik Nho, Allison C Nugent, Loes M Olde Loohuis, Jaap Oosterlaan, Martina Papmeyer, Irene Pappa, Lukas Pirpamer, Sara Pudas, Benno Pütz, Kumar B Rajan, Adaikalavan Ramasamy, Jennifer S Richards, Shannon L Risacher, Roberto Roiz-Santiañez, Nanda Rommelse, Emma J Rose, Natalie A Royle, Tatjana Rundek, Philipp G Sämann, Claudia L Satizabal, Lianne Schmaal, Andrew J Schork, Li Shen, Jean Shin, Elena Shumskaya, Albert V Smith, Emma Sprooten, Lachlan T Strike, Alexander Teumer, Russell Thomson, Diana Tordesillas-Gutierrez, Roberto Toro, Daniah Trabzuni, Dhananjay Vaidya, Jeroen Van der Grond, Dennis Van der Meer, Marjolein M J Van Donkelaar, Kristel R Van Eijk, Theo G M Van Erp, Daan Van Rooij, Esther Walton, Lars T Westlye, Christopher D Whelan, Beverly G Windham, Anderson M Winkler, Girma Woldehawariat, Christiane Wolf, Thomas Wolfers, Bing Xu, Lisa R Yanek, Jingyun Yang, Alex Zijdenbos, Marcel P Zwiers, Ingrid Agartz, Neelum T Aggarwal, Laura Almasy, David Ames, Philippe Amouyel, Ole A Andreassen, Sampath Arepalli, Amelia A Assareh, Sandra Barral, Mark E Bastin, Diane M Becker, James T Becker, David A Bennett, John Blangero, Hans van Bokhoven, Dorret I Boomsma, Henry Brodaty, Rachel M Brouwer, Han G Brunner, Randy L Buckner, Jan K Buitelaar, Kazima B Bulayeva, Wiepke Cahn, Vince D Calhoun, Dara M Cannon, Gianpiero L Cavalleri, Christopher Chen, Ching-Yu Cheng, Sven Cichon, Mark R Cookson, Aiden Corvin, Benedicto Crespo-Facorro, Joanne E Curran, Michael Czisch, Anders M Dale, Gareth E Davies, Eco J C De Geus, Philip L De Jager, Greig I de Zubicaray, Norman Delanty, Chantal Depondt, Anita L DeStefano, Allissa Dillman, Srdjan Djurovic, Gary Donohoe, Wayne C Drevets, Ravi Duggirala, Thomas D Dyer, Susanne Erk, Thomas Espeseth, Denis A Evans, Iryna O Fedko, Guillén Fernández, Luigi Ferrucci, Simon E Fisher, Debra A Fleischman, Ian Ford, Tatiana M Foroud, Peter T Fox, Clyde Francks, Masaki Fukunaga, J Raphael Gibbs, David C Glahn, Randy L Gollub, Harald H H Göring, Hans J Grabe, Robert C Green, Oliver Gruber, Vilmundur Gudnason, Sebastian Guelfi, Narelle K Hansell, John Hardy, Catharina A Hartman, Ryota Hashimoto, Katrin Hegenscheid, Andreas Heinz, Stephanie Le Hellard, Dena G Hernandez, Dirk J Heslenfeld, Beng-Choon Ho, Pieter J Hoekstra, Wolfgang Hoffmann, Albert Hofman, Florian Holsboer, Georg Homuth, Norbert Hosten, Jouke-Jan Hottenga, Hilleke E Hulshoff Pol, Masashi Ikeda, M Kamran Ikram, Clifford R Jack, Mark Jenkinson, Robert Johnson, Erik G Jönsson, J Wouter Jukema, René S Kahn, Ryota Kanai, Iwona Kloszewska, David S Knopman, Peter Kochunov, John B Kwok, Stephen M Lawrie, Hervé Lemaître, Xinmin Liu, Dan L Longo, W T Longstreth, Oscar L Lopez, Simon Lovestone, Oliver Martinez, Jean-Luc Martinot, Venkata S Mattay, Colm McDonald, Andrew M McIntosh, Katie L McMahon, Francis J McMahon, Patrizia Mecocci, Ingrid Melle, Andreas Meyer-Lindenberg, Sebastian Mohnke, Grant W Montgomery, Derek W Morris, Thomas H Mosley, Thomas W Mühleisen, Bertram Müller-Myhsok, Michael A Nalls, Matthias Nauck, Thomas E Nichols, Wiro J Niessen, Markus M Nöthen, Lars Nyberg, Kazutaka Ohi, Rene L Olvera, Roel A Ophoff, Massimo Pandolfo, Tomas Paus, Zdenka Pausova, Brenda W J H Penninx, G Bruce Pike, Steven G Potkin, Bruce M Psaty, Simone Reppermund, Marcella Rietschel, Joshua L Roffman, Nina Romanczuk-Seiferth, Jerome I Rotter, Mina Ryten, Ralph L Sacco, Perminder S Sachdev, Andrew J Saykin, Reinhold Schmidt, Peter R Schofield, Sigurdur Sigurdsson, Andy Simmons, Andrew Singleton, Sanjay M Sisodiya, Colin Smith, Jordan W Smoller, Hilkka Soininen, Velandai Srikanth, Vidar M Steen, David J Stott, Jessika E Sussmann, Anbupalam Thalamuthu, Henning Tiemeier, Arthur W Toga, Bryan J Traynor, Juan Troncoso, Jessica A Turner, Christophe Tzourio, Andre G Uitterlinden, Maria C Valdés Hernández, Marcel Van der Brug, Aad Van der Lugt, Nic J A Van der Wee, Cornelia M Van Duijn, Neeltje E M Van Haren, Dennis Van T Ent, Marie-Jose Van Tol, Badri N Vardarajan, Dick J Veltman, Meike W Vernooij, Henry Völzke, Henrik Walter, Joanna M Wardlaw, Thomas H Wassink, Michael E Weale, Daniel R Weinberger, Michael W Weiner, Wei Wen, Eric Westman, Tonya White, Tien Y Wong, Clinton B Wright, H Ronald Zielke, Alan B Zonderman, Ian J Deary, Charles DeCarli, Helena Schmidt, Nicholas G Martin, Anton J M De Craen, Margaret J Wright, Lenore J Launer, Gunter Schumann, Myriam Fornage, Barbara Franke, Stéphanie Debette, Sarah E Medland, M Arfan Ikram, and Paul M Thompson. Novel genetic loci underlying human intracranial volume identified through genome-wide association. Nat. Neurosci., 19(12):1569–1582, 12 2016. (doi:10.1038/nn.4398)

  • Nikhil Bhagwat, Jon Pipitone, Julie L Winterburn, Ting Guo, Emma G Duerden, Aristotle N Voineskos, Martin Lepage, Steven P Miller, Jens C Pruessner, and M Mallar Chakravarty. Manual-Protocol Inspired Technique for Improving Automated MR Image Segmentation during Label Fusion. Front Neurosci, 10:325, 2016. (doi:10.3389/fnins.2016.00325)

  • Jun Ku Chung, Shinichiro Nakajima, Eric Plitman, Yusuke Iwata, Danielle Uy, Philip Gerretsen, Fernando Caravaggio, M Mallar Chakravarty, and Ariel Graff-Guerrero. Β-Amyloid Burden is Not Associated with Cognitive Impairment in Schizophrenia: A Systematic Review. Am J Geriatr Psychiatry, 24(10):923–39, 10 2016. (doi:10.1016/j.jagp.2016.03.013)

  • Jun Ku Chung, Shinichiro Nakajima, Shunichiro Shinagawa, Eric Plitman,M Mallar Chakravarty, Yusuke Iwata, Fernando Caravaggio, Bruce G Pollock, Philip Gerretsen, and Ariel Graff-Guerrero and. Benzodiazepine Use Attenuates Cortical β-Amyloid and is Not Associated with Progressive Cognitive Decline in Nondemented Elderly Adults: A Pilot Study Using F18-Florbetapir Positron Emission Tomography. Am J Geriatr Psychiatry, 24(11):1028–1039, 11 2016. (doi:10.1016/j.jagp.2016.04.013)

  • Jun Ku Chung, Eric Plitman, Shinichiro Nakajima, M Mallar Chakravarty, Fernando Caravaggio, Hiroyoshi Takeuchi, Philip Gerretsen, Yusuke Iwata, Raihaan Patel, Benoit H Mulsant, and Ariel Graff-Guerrero. Depressive Symptoms and Small Hippocampal Volume Accelerate the Progression to Dementia from Mild Cognitive Impairment. J. Alzheimers Dis., 49(3):743–54, 2016. (doi:10.3233/JAD-150679)

  • Jun Ku Chung, Eric Plitman, Shinichiro Nakajima, Tiffany W Chow, M Mallar Chakravarty, Fernando Caravaggio, Philip Gerretsen, Eric E Brown, Yusuke Iwata, Benoit H Mulsant, and Ariel Graff-Guerrero. Lifetime History of Depression Predicts Increased Amyloid-β Accumulation in Patients with Mild Cognitive Impairment. J. Alzheimers Dis., 49(4):1189–90, 2016. (doi:10.3233/JAD-159007)

  • Sandra E Leh, Andrea M Kälin, Clemens Schroeder, Min Tae M Park, M Mallar Chakravarty, Patrick Freund, Anton F Gietl, Florian Riese, Spyros Kollias, Christoph Hock, and Lars Michels. Volumetric and shape analysis of the thalamus and striatum in amnestic mild cognitive impairment. J. Alzheimers Dis., 49(1):237–49, 2016. (doi:10.3233/JAD-150080)

  • Tristram A Lett, James L Kennedy, Natasha Radhu, Luis G Dominguez, M Mallar Chakravarty, Arash Nazeri, Faranak Farzan, Henrik Walter, Andreas Heinz, Benoit H Mulsant, Zafiris J Daskalakis, and Aristotle N Voineskos. Prefrontal White Matter Structure Mediates the Influence of GAD1 on Working Memory.Neuropsychopharmacology, 41(9):2224–31, 08 2016. (doi:10.1038/npp.2016.14)

  • Andres M Lozano, Lisa Fosdick, M Mallar Chakravarty, Jeannie-Marie Leoutsakos, Cynthia Munro, Esther Oh, Kristen E Drake, Christopher H Lyman, Paul B Rosenberg, William S Anderson, David F Tang-Wai, Jo Cara Pendergrass, Stephen Salloway, Wael F Asaad, Francisco A Ponce, Anna Burke, Marwan Sabbagh, David A Wolk, Gordon Baltuch, Michael S Okun, Kelly D Foote, Mary Pat McAndrews, Peter Giacobbe, Steven D Targum, Constantine G Lyketsos, and Gwenn S Smith. A Phase II Study of Fornix Deep Brain Stimulation in Mild Alzheimer's Disease. J. Alzheimers Dis., 54(2):777–87, 09 2016. (doi:10.3233/JAD-160017)

  • Diana Markova, Louis Richer, Melissa Pangelinan, Deborah H Schwartz, Gabriel Leonard, Michel Perron, G Bruce Pike, Suzanne Veillette, M Mallar Chakravarty, Zdenka Pausova, and Tomáš Paus. Age- and sex-related variations in vocal-tract morphology and voice acoustics during adolescence. Horm Behav, 81:84–96, 05 2016. (doi:10.1016/j.yhbeh.2016.03.001)

  • Sejal Patel, Min Tae M Park, , M Mallar Chakravarty, and Jo Knight. Gene Prioritization for Imaging Genetics Studies Using Gene Ontology and a Stratified False Discovery Rate Approach. Front Neuroinform, 10:14, 2016. (doi:10.3389/fninf.2016.00014)

  • Eric Plitman, Raihaan Patel, Jun Ku Chung, Jon Pipitone, Sofia Chavez, Francisco Reyes-Madrigal, Gladys Gómez-Cruz, Pablo León-Ortiz, M Mallar Chakravarty, Camilo de la Fuente-Sandoval, and Ariel Graff-Guerrero. Glutamatergic Metabolites, Volume and Cortical Thickness in Antipsychotic-Naive Patients with First-Episode Psychosis: Implications for Excitotoxicity.Neuropsychopharmacology, 41(10):2606–13, 09 2016. (doi:10.1038/npp.2016.84)

  • Tejas Sankar, Stanley X Li, Toshiki Obuchi, Alfonso Fasano, Melanie Cohn, Mojgan Hodaie, M Mallar Chakravarty, and Andres M Lozano. Structural brain changes following subthalamic nucleus deep brain stimulation in Parkinson's disease. Mov. Disord., 31(9):1423–5, 09 2016. (doi:10.1002/mds.26707)

  • Manuela Schuetze, Min Tae M Park, Ivy Yk Cho, Frank P MacMaster, M Mallar Chakravarty, and Signe L Bray. Morphological Alterations in the Thalamus, Striatum, and Pallidum in Autism Spectrum Disorder. Neuropsychopharmacology, 41(11):2627–37, 10 2016. (doi:10.1038/npp.2016.64)

  • Jai L Shah, M Mallar Chakravarty, Ridha Joober, and Martin Lepage. Dynamic endophenotypes and longitudinal trajectories: capturing changing aspects of development in early psychosis. J Psychiatry Neurosci, 41(3):148–51, 04 2016.

  • Dafna Sussman, Rachel C Leung, M Mallar Chakravarty, Jason P Lerch, and Margot J Taylor. The developing human brain: age-related changes in cortical, subcortical, and cerebellar anatomy. Brain Behav, 6(4):e00457, 04 2016. (doi:10.1002/brb3.457)

  • Jun Ku Chung, Eric Plitman, Shinichiro Nakajima, M Mallar Chakravarty, Fernando Caravaggio, Philip Gerretsen, Yusuke Iwata, and Ariel Graff-Guerrero and. Cortical Amyloid β Deposition and Current Depressive Symptoms in Alzheimer Disease and Mild Cognitive Impairment. J Geriatr Psychiatry Neurol, 29(3):149–59, May 2016. (doi:10.1177/0891988715606230)

  • Emma G Duerden, Ting Guo, Lorin Dodbiba, M Mallar Chakravarty, Vann Chau, Kenneth J Poskitt, Anne Synnes, Ruth E Grunau, and Steven P Miller. Midazolam dose correlates with abnormal hippocampal growth and neurodevelopmental outcome in preterm infants. Ann. Neurol., 79(4):548–59, April 2016. (doi:10.1002/ana.24601)

  • Dorothee Schoemaker, Claudia Buss, Kevin Head, Curt A Sandman, Elysia P Davis, M Mallar Chakravarty, Serge Gauthier, and Jens C Pruessner. Hippocampus and amygdala volumes from magnetic resonance images in children: Assessing accuracy of FreeSurfer and FSL against manual segmentation. Neuroimage, 129:1–14, April 2016. (doi:10.1016/j.neuroimage.2016.01.038)

  • Michael Bodnar, Ashok K Malla, Carolina Makowski, M Mallar Chakravarty, Ridha Joober, and Martin Lepage. The effect of second-generation antipsychotics on hippocampal volume in first episode of psychosis: longitudinal study. BJPsych Open, 2(2):139–146, March 2016. (doi:10.1192/bjpo.bp.115.002444)

  • Paul Kirkpatrick Reardon, Liv Clasen, Jay N Giedd, Jonathan Blumenthal, Jason P Lerch, M Mallar Chakravarty, and Armin Raznahan. An Allometric Analysis of Sex and Sex Chromosome Dosage Effects on Subcortical Anatomy in Humans. J. Neurosci., 36(8):2438–48, February 2016. (doi:10.1523/JNEUROSCI.3195-15.2016)

  • Tina Roostaei, Shokufeh Sadaghiani, Min Tae M Park, Rahil Mashhadi, Aria Nazeri, Sina Noshad, Mohammad Javad Salehi, Maryam Naghibzadeh, Abdorreza Naser Moghadasi, Mahsa Owji, Rozita Doosti, Amir Pejman Hashemi Taheri, Ali Shakouri Rad, Amirreza Azimi, M Mallar Chakravarty, Aristotle N Voineskos, Arash Nazeri, and Mohammad Ali Sahraian. Channelopathy-related SCN10A gene variants predict cerebellar dysfunction in multiple sclerosis.Neurology, 86(5):410–7, February 2016. (doi:10.1212/WNL.0000000000002326)

  • M Mallar Chakravarty, Clement Hamani, Alonso Martinez-Canabal, Jacob Ellegood, Christine Laliberté, José N Nobrega, Tejas Sankar, Andres M Lozano, Paul W Frankland, and Jason P Lerch. Deep brain stimulation of the ventromedial prefrontal cortex causes reorganization of neuronal processes and vasculature. Neuroimage, 125:422–427, January 2016. (doi:10.1016/j.neuroimage.2015.10.049)

​

2016

​​

  • Alexander J Barnett, Min Tae M Park, Jon Pipitone, M Mallar Chakravarty, and Mary Pat McAndrews. Functional and structural correlates of memory in patients with mesial temporal lobe epilepsy. Front Neurol, 6:103, 2015. (doi:10.3389/fneur.2015.00103)

  • Jun Ku Chung, Eric Plitman, Shinichiro Nakajima, Tiffany W Chow, M Mallar Chakravarty, Fernando Caravaggio, Philip Gerretsen, Eric E Brown, Yusuke Iwata, Benoit H Mulsant, and Ariel Graff-Guerrero and. Lifetime History of Depression Predicts Increased Amyloid-β Accumulation in Patients with Mild Cognitive Impairment. J. Alzheimers Dis., 45(3):907–19, 2015. (doi:10.3233/JAD-142931)

  • Klára Marečková, Mallar M Chakravarty, Claire Lawrence, Gabriel Leonard, Daniel Perusse, Michel Perron, Bruce G Pike, Louis Richer, Suzanne Veillette, Zdenka Pausova, and Tomáš Paus. Identifying craniofacial features associated with prenatal exposure to androgens and testing their relationship with brain development. Brain Struct Funct, 220(6):3233–44, November 2015. (doi:10.1007/s00429-014-0852-3)

  • Arash Nazeri, Tina Roostaei, Shokufeh Sadaghiani, M Mallar Chakravarty, Shirley Eberly, Anthony E Lang, and Aristotle N Voineskos. Genome-wide variant by serum urate interaction in Parkinson's disease. Ann. Neurol., 78(5):731–41, November 2015. (doi:10.1002/ana.24504)

  • Brian J Nieman, A Elizabeth de Guzman, Lisa M Gazdzinski, Jason P Lerch,M Mallar Chakravarty, Jon Pipitone, Douglas Strother, Chris Fryer, Eric Bouffet, Suzanne Laughlin, Normand Laperriere, Lily Riggs, Jovanka Skocic, and Donald J Mabbott. White and Gray Matter Abnormalities After Cranial Radiation in Children and Mice. Int. J. Radiat. Oncol. Biol. Phys., 93(4):882–91, November 2015. (doi:10.1016/j.ijrobp.2015.07.2293)

  • Julie Winterburn, Jens C Pruessner, Chavez Sofia, Mark M Schira, Nancy J Lobaugh, Aristotle N Voineskos, and M Mallar Chakravarty. High-resolution In Vivo Manual Segmentation Protocol for Human Hippocampal Subfields Using 3T Magnetic Resonance Imaging. J Vis Exp, (105):e51861, November 2015. (doi:10.3791/51861)

  • Stefano Magon, Arne May, Anne Stankewitz, Peter J Goadsby, Amy R Tso, Messoud Ashina, Faisal Mohammad Amin, Christian L Seifert, M Mallar Chakravarty, Jannis Müller, and Till Sprenger. Morphological Abnormalities of Thalamic Subnuclei in Migraine: A Multicenter MRI Study at 3 Tesla. J. Neurosci., 35(40):13800–6, October 2015. (doi:10.1523/JNEUROSCI.2154-15.2015)

  • Cindy L Hovington, Michael Bodnar, M Mallar Chakravarty, Ridha Joober, Ashok K Malla, and Martin Lepage. Investigation of white matter abnormalities in first episode psychosis patients with persistent negative symptoms.Psychiatry Res, 233(3):402–8, September 2015. (doi:10.1016/j.pscychresns.2015.06.017)

  • Aristotle N Voineskos, Julie L Winterburn, Daniel Felsky, Jon Pipitone, Tarek K Rajji, Benoit H Mulsant, and M Mallar Chakravarty. Hippocampal (subfield) volume and shape in relation to cognitive performance across the adult lifespan. Hum Brain Mapp, 36(8):3020–37, August 2015. (doi:10.1002/hbm.22825)

  • Rosanna K Olsen, Melissa M Pangelinan, Cari Bogulski, M Mallar Chakravarty, Gigi Luk, Cheryl L Grady, and Ellen Bialystok. The effect of lifelong bilingualism on regional grey and white matter volume. Brain Res., 1612:128–39, July 2015. (doi:10.1016/j.brainres.2015.02.034)

  • Arash Nazeri, M Mallar Chakravarty, Tarek K Rajji, Daniel Felsky, David J Rotenberg, Mikko Mason, Li N Xu, Nancy J Lobaugh, Benoit H Mulsant, and Aristotle N Voineskos. Superficial white matter as a novel substrate of age-related cognitive decline. Neurobiol. Aging, 36(6):2094–106, June 2015. (doi:10.1016/j.neurobiolaging.2015.02.022)

  • Jonas Richiardi, Andre Altmann, Anna-Clare Milazzo, Catie Chang, M Mallar Chakravarty, Tobias Banaschewski, Gareth J Barker, Arun L W Bokde, Uli Bromberg, Christian Büchel, Patricia Conrod, Mira Fauth-Bühler, Herta Flor, Vincent Frouin, Jürgen Gallinat, Hugh Garavan, Penny Gowland, Andreas Heinz, Hervé Lemaître, Karl F Mann, Jean-Luc Martinot, Frauke Nees, Tomáš Paus, Zdenka Pausova, Marcella Rietschel, Trevor W Robbins, Michael N Smolka, Rainer Spanagel, Andreas Ströhle, Gunter Schumann, Mike Hawrylycz, Jean-Baptiste Poline, and Michael D Greicius and. BRAIN NETWORKS. Correlated gene expression supports synchronous activity in brain networks. Science, 348(6240):1241–4, June 2015. (doi:10.1126/science.1255905)

  • Anders Dohn, Eduardo A Garza-Villarreal, M Mallar Chakravarty, Mads Hansen, Jason P Lerch, and Peter Vuust. Gray- and white-matter anatomy of absolute pitch possessors. Cereb. Cortex, 25(5):1379–88, May 2015. (doi:10.1093/cercor/bht334)

  • Anne L Wheeler, Michèle Wessa, Philip R Szeszko, George Foussias, M Mallar Chakravarty, Jason P Lerch, Pamela DeRosse, Gary Remington, Benoit H Mulsant, Julia Linke, Anil K Malhotra, and Aristotle N Voineskos. Further neuroimaging evidence for the deficit subtype of schizophrenia: a cortical connectomics analysis. JAMA Psychiatry, 72(5):446–55, May 2015. (doi:10.1001/jamapsychiatry.2014.3020)

  • Paul A Yushkevich, Robert S C Amaral, Jean C Augustinack, Andrew R Bender, Jeffrey D Bernstein, Marina Boccardi, Martina Bocchetta, Alison C Burggren, Valerie A Carr, M Mallar Chakravarty, Gaël Chételat, Ana M Daugherty, Lila Davachi, Song-Lin Ding, Arne Ekstrom, Mirjam I Geerlings, Abdul Hassan, Yushan Huang, J Eugenio Iglesias, Renaud La Joie, Geoffrey A Kerchner, Karen F LaRocque, Laura A Libby, Nikolai Malykhin, Susanne G Mueller, Rosanna K Olsen, Daniela J Palombo, Mansi B Parekh, John B Pluta, Alison R Preston, Jens C Pruessner, Charan Ranganath, Naftali Raz, Margaret L Schlichting, Dorothee Schoemaker, Sachi Singh, Craig E L Stark, Nanthia Suthana, Alexa Tompary, Marta M Turowski, Koen Van Leemput, Anthony D Wagner, Lei Wang, Julie L Winterburn, Laura E M Wisse, Michael A Yassa, and Michael M Zeineh and. Quantitative comparison of 21 protocols for labeling hippocampal subfields and parahippocampal subregions in in vivo MRI: towards a harmonized segmentation protocol. Neuroimage, 111:526–41, May 2015. (doi:10.1016/j.neuroimage.2015.01.004)

  • M Mallar Chakravarty, Judith L Rapoport, Jay N Giedd, Armin Raznahan, Philip Shaw, D Louis Collins, Jason P Lerch, and Nitin Gogtay. Striatal shape abnormalities as novel neurodevelopmental endophenotypes in schizophrenia: a longitudinal study. Hum Brain Mapp, 36(4):1458–69, April 2015. (doi:10.1002/hbm.22715)

  • Derrek P Hibar, Jason L Stein, Miguel E Renteria, Alejandro Arias-Vasquez, Sylvane Desrivières, Neda Jahanshad, Roberto Toro, Katharina Wittfeld, Lucija Abramovic, Micael Andersson, Benjamin S Aribisala, Nicola J Armstrong, Manon Bernard, Marc M Bohlken, Marco P Boks, Janita Bralten, Andrew A Brown, M Mallar Chakravarty, Qiang Chen, Christopher R K Ching, Gabriel Cuellar-Partida, Anouk den Braber, Sudheer Giddaluru, Aaron L Goldman, Oliver Grimm, Tulio Guadalupe, Johanna Hass, Girma Woldehawariat, Avram J Holmes, Martine Hoogman, Deborah Janowitz, Tianye Jia, Sungeun Kim, Marieke Klein, Bernd Kraemer, Phil H Lee, Loes M Olde Loohuis, Michelle Luciano, Christine Macare, Karen A Mather, Manuel Mattheisen, Yuri Milaneschi, Kwangsik Nho, Martina Papmeyer, Adaikalavan Ramasamy, Shannon L Risacher, Roberto Roiz-Santiañez, Emma J Rose, Alireza Salami, Philipp G Sämann, Lianne Schmaal, Andrew J Schork, Jean Shin, Lachlan T Strike, Alexander Teumer, Marjolein M J van Donkelaar, Kristel R van Eijk, Raymond K Walters, Lars T Westlye, Christopher D Whelan, Anderson M Winkler, Marcel P Zwiers, Saud Alhusaini, Lavinia Athanasiu, Stefan Ehrlich, Marina M H Hakobjan, Cecilie B Hartberg, Unn K Haukvik, Angelien J G A M Heister, David Hoehn, Dalia Kasperaviciute, David C M Liewald, Lorna M Lopez, Remco R R Makkinje, Mar Matarin, Marlies A M Naber, D Reese McKay, Margaret Needham, Allison C Nugent, Benno Pütz, Natalie A Royle, Li Shen, Emma Sprooten, Daniah Trabzuni, Saskia S L van der Marel, Kimm J E van Hulzen, Esther Walton, Christiane Wolf, Laura Almasy, David Ames, Sampath Arepalli, Amelia A Assareh, Mark E Bastin, Henry Brodaty, Kazima B Bulayeva, Melanie A Carless, Sven Cichon, Aiden Corvin, Joanne E Curran, Michael Czisch, Greig I de Zubicaray, Allissa Dillman, Ravi Duggirala, Thomas D Dyer, Susanne Erk, Iryna O Fedko, Luigi Ferrucci, Tatiana M Foroud, Peter T Fox, Masaki Fukunaga, J Raphael Gibbs, Harald H H Göring, Robert C Green, Sebastian Guelfi, Narelle K Hansell, Catharina A Hartman, Katrin Hegenscheid, Andreas Heinz, Dena G Hernandez, Dirk J Heslenfeld, Pieter J Hoekstra, Florian Holsboer, Georg Homuth, Jouke-Jan Hottenga, Masashi Ikeda, Clifford R Jack, Mark Jenkinson, Robert Johnson, Ryota Kanai, Maria Keil, Jack W Kent, Peter Kochunov, John B Kwok, Stephen M Lawrie, Xinmin Liu, Dan L Longo, Katie L McMahon, Eva Meisenzahl, Ingrid Melle, Sebastian Mohnke, Grant W Montgomery, Jeanette C Mostert, Thomas W Mühleisen, Michael A Nalls, Thomas E Nichols, Lars G Nilsson, Markus M Nöthen, Kazutaka Ohi, Rene L Olvera, Rocio Perez-Iglesias, G Bruce Pike, Steven G Potkin, Ivar Reinvang, Simone Reppermund, Marcella Rietschel, Nina Romanczuk-Seiferth, Glenn D Rosen, Dan Rujescu, Knut Schnell, Peter R Schofield, Colin Smith, Vidar M Steen, Jessika E Sussmann, Anbupalam Thalamuthu, Arthur W Toga, Bryan J Traynor, Juan Troncoso, Jessica A Turner, Maria C Valdés Hernández, Dennis van 't Ent, Marcel van der Brug, Nic J A van der Wee, Marie-Jose van Tol, Dick J Veltman, Thomas H Wassink, Eric Westman, Ronald H Zielke, Alan B Zonderman, David G Ashbrook, Reinmar Hager, Lu Lu, Francis J McMahon, Derek W Morris, Robert W Williams, Han G Brunner, Randy L Buckner, Jan K Buitelaar, Wiepke Cahn, Vince D Calhoun, Gianpiero L Cavalleri, Benedicto Crespo-Facorro, Anders M Dale, Gareth E Davies, Norman Delanty, Chantal Depondt, Srdjan Djurovic, Wayne C Drevets, Thomas Espeseth, Randy L Gollub, Beng-Choon Ho, Wolfgang Hoffmann, Norbert Hosten, René S Kahn, Stephanie Le Hellard, Andreas Meyer-Lindenberg, Bertram Müller-Myhsok, Matthias Nauck, Lars Nyberg, Massimo Pandolfo, Brenda W J H Penninx, Joshua L Roffman, Sanjay M Sisodiya, Jordan W Smoller, Hans van Bokhoven, Neeltje E M van Haren, Henry Völzke, Henrik Walter, Michael W Weiner, Wei Wen, Tonya White, Ingrid Agartz, Ole A Andreassen, John Blangero, Dorret I Boomsma, Rachel M Brouwer, Dara M Cannon, Mark R Cookson, Eco J C de Geus, Ian J Deary, Gary Donohoe, Guillén Fernández, Simon E Fisher, Clyde Francks, David C Glahn, Hans J Grabe, Oliver Gruber, John Hardy, Ryota Hashimoto, Hilleke E Hulshoff Pol, Erik G Jönsson, Iwona Kloszewska, Simon Lovestone, Venkata S Mattay, Patrizia Mecocci, Colm McDonald, Andrew M McIntosh, Roel A Ophoff, Tomas Paus, Zdenka Pausova, Mina Ryten, Perminder S Sachdev, Andrew J Saykin, Andy Simmons, Andrew Singleton, Hilkka Soininen, Joanna M Wardlaw, Michael E Weale, Daniel R Weinberger, Hieab H H Adams, Lenore J Launer, Stephan Seiler, Reinhold Schmidt, Ganesh Chauhan, Claudia L Satizabal, James T Becker, Lisa Yanek, Sven J van der Lee, Maritza Ebling, Bruce Fischl, W T Longstreth, Douglas Greve, Helena Schmidt, Paul Nyquist, Louis N Vinke, Cornelia M van Duijn, Luting Xue, Bernard Mazoyer, Joshua C Bis, Vilmundur Gudnason, Sudha Seshadri, M Arfan Ikram, , , , , , Nicholas G Martin, Margaret J Wright, Gunter Schumann, Barbara Franke, Paul M Thompson, and Sarah E Medland. Common genetic variants influence human subcortical brain structures. Nature, 520(7546):224–9, April 2015. (doi:10.1038/nature14101)

  • Manouchehr S Vafaee, Albert Gjedde, Nasrin Imamirad, Kim Vang, Mallar M Chakravarty, Jason P Lerch, and Paul Cumming. Smoking normalizes cerebral blood flow and oxygen consumption after 12-hour abstention. J. Cereb. Blood Flow Metab., 35(4):699–705, March 2015. (doi:10.1038/jcbfm.2014.246)

  • Yiming Xiao, Vladimir Fonov, Silvain Bériault, Fahd Al Subaie, M Mallar Chakravarty, Abbas F Sadikot, G Bruce Pike, and D Louis Collins. Multi-contrast unbiased MRI atlas of a Parkinson's disease population. Int J Comput Assist Radiol Surg, 10(3):329–41, March 2015. (doi:10.1007/s11548-014-1068-y)

  • Michael T Treadway, Michael L Waskom, Daniel G Dillon, Avram J Holmes, Min Tae M Park, M Mallar Chakravarty, Sunny J Dutra, Frida E Polli, Dan V Iosifescu, Maurizio Fava, John D E Gabrieli, and Diego A Pizzagalli. Illness progression, recent stress, and morphometry of hippocampal subfields and medial prefrontal cortex in major depression. Biol. Psychiatry, 77(3):285–294, February 2015. (doi:10.1016/j.biopsych.2014.06.018)

  • Philip Gerretsen, Mahesh Menon, M Mallar Chakravarty, Jason P Lerch, David C Mamo, Gary Remington, Bruce G Pollock, and Ariel Graff-Guerrero. Illness denial in schizophrenia spectrum disorders: a function of left hemisphere dominance.Hum Brain Mapp, 36(1):213–25, January 2015. (doi:10.1002/hbm.22624)

  • Amy C Janes, Min Tae M Park, Stacey Farmer, and M Mallar Chakravarty. Striatal morphology is associated with tobacco cigarette craving.Neuropsychopharmacology, 40(2):406–11, January 2015. (doi:10.1038/npp.2014.185)

  • Arash Nazeri, M Mallar Chakravarty, David J Rotenberg, Tarek K Rajji, Yogesh Rathi, Oleg V Michailovich, and Aristotle N Voineskos. Functional consequences of neurite orientation dispersion and density in humans across the adult lifespan. J. Neurosci., 35(4):1753–62, January 2015. (doi:10.1523/JNEUROSCI.3979-14.2015)

​

2015

​​

  • Miriam Friedel, Matthijs C van Eede, Jon Pipitone, M Mallar Chakravarty, and Jason P Lerch. Pydpiper: a flexible toolkit for constructing novel registration pipelines. Front Neuroinform, 8:67, 2014. (doi:10.3389/fninf.2014.00067)

  • Jon Pipitone, Min Tae M Park, Julie Winterburn, Tristram A Lett, Jason P Lerch, Jens C Pruessner, Martin Lepage, Aristotle N Voineskos, andM Mallar Chakravarty and. Multi-atlas segmentation of the whole hippocampus and subfields using multiple automatically generated templates. Neuroimage, 101:494–512, November 2014. (doi:10.1016/j.neuroimage.2014.04.054)

  • Michael D Fox, Randy L Buckner, Hesheng Liu, M Mallar Chakravarty, Andres M Lozano, and Alvaro Pascual-Leone. Resting-state networks link invasive and noninvasive brain stimulation across diverse psychiatric and neurological diseases. Proc. Natl. Acad. Sci. U.S.A., 111(41):E4367–75, October 2014. (doi:10.1073/pnas.1405003111)

  • Eric Plitman, Shinichiro Nakajima, Camilo de la Fuente-Sandoval, Philip Gerretsen, M Mallar Chakravarty, Jane Kobylianskii, Jun Ku Chung, Fernando Caravaggio, Yusuke Iwata, Gary Remington, and Ariel Graff-Guerrero. Glutamate-mediated excitotoxicity in schizophrenia: a review. Eur Neuropsychopharmacol, 24(10):1591–605, October 2014. (doi:10.1016/j.euroneuro.2014.07.015)

  • Stefano Magon, Laura Gaetano, M Mallar Chakravarty, Jason P Lerch, Yvonne Naegelin, Christoph Stippich, Ludwig Kappos, Ernst-Wilhelm Radue, and Till Sprenger. White matter lesion filling improves the accuracy of cortical thickness measurements in multiple sclerosis patients: a longitudinal study. BMC Neurosci, 15:106, September 2014. (doi:10.1186/1471-2202-15-106)

  • Stefano Magon, M Mallar Chakravarty, Michael Amann, Katrin Weier, Yvonne Naegelin, Michaela Andelova, Ernst-Wilhelm Radue, Christoph Stippich, Jason P Lerch, Ludwig Kappos, and Till Sprenger. Label-fusion-segmentation and deformation-based shape analysis of deep gray matter in multiple sclerosis: the impact of thalamic subnuclei on disability. Hum Brain Mapp, 35(8):4193–203, August 2014. (doi:10.1002/hbm.22470)

  • Emma G Duerden, Dallas Card, S Wendy Roberts, Kathleen M Mak-Fan, M Mallar Chakravarty, Jason P Lerch, and Margot J Taylor. Self-injurious behaviours are associated with alterations in the somatosensory system in children with autism spectrum disorder. Brain Struct Funct, 219(4):1251–61, July 2014. (doi:10.1007/s00429-013-0562-2)

  • Min Tae M Park, Jon Pipitone, Lawrence H Baer, Julie L Winterburn, Yashvi Shah, Sofia Chavez, Mark M Schira, Nancy J Lobaugh, Jason P Lerch, Aristotle N Voineskos, and M Mallar Chakravarty. Derivation of high-resolution MRI atlases of the human cerebellum at 3T and segmentation using multiple automatically generated templates. Neuroimage, 95:217–31, July 2014. (doi:10.1016/j.neuroimage.2014.03.037)

  • Philip Shaw, Pietro De Rossi, Bethany Watson, Amy Wharton, Deanna Greenstein, Armin Raznahan, Wendy Sharp, Jason P Lerch, and M Mallar Chakravarty. Mapping the development of the basal ganglia in children with attention-deficit/hyperactivity disorder. J Am Acad Child Adolesc Psychiatry, 53(7):780–9.e11, July 2014. (doi:10.1016/j.jaac.2014.05.003)

  • Anne L Wheeler, M Mallar Chakravarty, Jason P Lerch, Jon Pipitone, Zafiris J Daskalakis, Tarek K Rajji, Benoit H Mulsant, and Aristotle N Voineskos. Disrupted prefrontal interhemispheric structural coupling in schizophrenia related to working memory performance. Schizophr Bull, 40(4):914–24, July 2014. (doi:10.1093/schbul/sbt100)

  • Angelita Pui-Yee Wong, Jon Pipitone, Min Tae M Park, Erin W Dickie, Gabriel Leonard, Michel Perron, Bruce G Pike, Louis Richer, Suzanne Veillette, M Mallar Chakravarty, Zdenka Pausova, and Tomáš Paus. Estimating volumes of the pituitary gland from T1-weighted magnetic-resonance images: effects of age, puberty, testosterone, and estradiol. Neuroimage, 94:216–221, July 2014. (doi:10.1016/j.neuroimage.2014.02.030)

  • Paul M Thompson, Jason L Stein, Sarah E Medland, Derrek P Hibar, Alejandro Arias Vasquez, Miguel E Renteria, Roberto Toro, Neda Jahanshad, Gunter Schumann, Barbara Franke, Margaret J Wright, Nicholas G Martin, Ingrid Agartz, Martin Alda, Saud Alhusaini, Laura Almasy, Jorge Almeida, Kathryn Alpert, Nancy C Andreasen, Ole A Andreassen, Liana G Apostolova, Katja Appel, Nicola J Armstrong, Benjamin Aribisala, Mark E Bastin, Michael Bauer, Carrie E Bearden, Orjan Bergmann, Elisabeth B Binder, John Blangero, Henry J Bockholt, Erlend Bøen, Catherine Bois, Dorret I Boomsma, Tom Booth, Ian J Bowman, Janita Bralten, Rachel M Brouwer, Han G Brunner, David G Brohawn, Randy L Buckner, Jan Buitelaar, Kazima Bulayeva, Juan R Bustillo, Vince D Calhoun, Dara M Cannon, Rita M Cantor, Melanie A Carless, Xavier Caseras, Gianpiero L Cavalleri, M Mallar Chakravarty, Kiki D Chang, Christopher R K Ching, Andrea Christoforou, Sven Cichon, Vincent P Clark, Patricia Conrod, Giovanni Coppola, Benedicto Crespo-Facorro, Joanne E Curran, Michael Czisch, Ian J Deary, Eco J C de Geus, Anouk den Braber, Giuseppe Delvecchio, Chantal Depondt, Lieuwe de Haan, Greig I de Zubicaray, Danai Dima, Rali Dimitrova, Srdjan Djurovic, Hongwei Dong, Gary Donohoe, Ravindranath Duggirala, Thomas D Dyer, Stefan Ehrlich, Carl Johan Ekman, Torbjørn Elvsåshagen, Louise Emsell, Susanne Erk, Thomas Espeseth, Jesen Fagerness, Scott Fears, Iryna Fedko, Guillén Fernández, Simon E Fisher, Tatiana Foroud, Peter T Fox, Clyde Francks, Sophia Frangou, Eva Maria Frey, Thomas Frodl, Vincent Frouin, Hugh Garavan, Sudheer Giddaluru, David C Glahn, Beata Godlewska, Rita Z Goldstein, Randy L Gollub, Hans J Grabe, Oliver Grimm, Oliver Gruber, Tulio Guadalupe, Raquel E Gur, Ruben C Gur, Harald H H Göring, Saskia Hagenaars, Tomas Hajek, Geoffrey B Hall, Jeremy Hall, John Hardy, Catharina A Hartman, Johanna Hass, Sean N Hatton, Unn K Haukvik, Katrin Hegenscheid, Andreas Heinz, Ian B Hickie, Beng-Choon Ho, David Hoehn, Pieter J Hoekstra, Marisa Hollinshead, Avram J Holmes, Georg Homuth, Martine Hoogman, L Elliot Hong, Norbert Hosten, Jouke-Jan Hottenga, Hilleke E Hulshoff Pol, Kristy S Hwang, Clifford R Jack, Mark Jenkinson, Caroline Johnston, Erik G Jönsson, René S Kahn, Dalia Kasperaviciute, Sinead Kelly, Sungeun Kim, Peter Kochunov, Laura Koenders, Bernd Krämer, John B J Kwok, Jim Lagopoulos, Gonzalo Laje, Mikael Landen, Bennett A Landman, John Lauriello, Stephen M Lawrie, Phil H Lee, Stephanie Le Hellard, Herve Lemaître, Cassandra D Leonardo, Chiang-Shan Li, Benny Liberg, David C Liewald, Xinmin Liu, Lorna M Lopez, Eva Loth, Anbarasu Lourdusamy, Michelle Luciano, Fabio Macciardi, Marise W J Machielsen, Glenda M Macqueen, Ulrik F Malt, René Mandl, Dara S Manoach, Jean-Luc Martinot, Mar Matarin, Karen A Mather, Manuel Mattheisen, Morten Mattingsdal, Andreas Meyer-Lindenberg, Colm McDonald, Andrew M McIntosh, Francis J McMahon, Katie L McMahon, Eva Meisenzahl, Ingrid Melle, Yuri Milaneschi, Sebastian Mohnke, Grant W Montgomery, Derek W Morris, Eric K Moses, Bryon A Mueller, Susana Muñoz Maniega, Thomas W Mühleisen, Bertram Müller-Myhsok, Benson Mwangi, Matthias Nauck, Kwangsik Nho, Thomas E Nichols, Lars-Göran Nilsson, Allison C Nugent, Lars Nyberg, Rene L Olvera, Jaap Oosterlaan, Roel A Ophoff, Massimo Pandolfo, Melina Papalampropoulou-Tsiridou, Martina Papmeyer, Tomas Paus, Zdenka Pausova, Godfrey D Pearlson, Brenda W Penninx, Charles P Peterson, Andrea Pfennig, Mary Phillips, G Bruce Pike, Jean-Baptiste Poline, Steven G Potkin, Benno Pütz, Adaikalavan Ramasamy, Jerod Rasmussen, Marcella Rietschel, Mark Rijpkema, Shannon L Risacher, Joshua L Roffman, Roberto Roiz-Santiañez, Nina Romanczuk-Seiferth, Emma J Rose, Natalie A Royle, Dan Rujescu, Mina Ryten, Perminder S Sachdev, Alireza Salami, Theodore D Satterthwaite, Jonathan Savitz, Andrew J Saykin, Cathy Scanlon, Lianne Schmaal, Hugo G Schnack, Andrew J Schork, S Charles Schulz, Remmelt Schür, Larry Seidman, Li Shen, Jody M Shoemaker, Andrew Simmons, Sanjay M Sisodiya, Colin Smith, Jordan W Smoller, Jair C Soares, Scott R Sponheim, Emma Sprooten, John M Starr, Vidar M Steen, Stephen Strakowski, Lachlan Strike, Jessika Sussmann, Philipp G Sämann, Alexander Teumer, Arthur W Toga, Diana Tordesillas-Gutierrez, Daniah Trabzuni, Sarah Trost, Jessica Turner, Martijn Van den Heuvel, Nic J van der Wee, Kristel van Eijk, Theo G M van Erp, Neeltje E M van Haren, Dennis van 't Ent, Marie-Jose van Tol, Maria C Valdés Hernández, Dick J Veltman, Amelia Versace, Henry Völzke, Robert Walker, Henrik Walter, Lei Wang, Joanna M Wardlaw, Michael E Weale, Michael W Weiner, Wei Wen, Lars T Westlye, Heather C Whalley, Christopher D Whelan, Tonya White, Anderson M Winkler, Katharina Wittfeld, Girma Woldehawariat, Christiane Wolf, David Zilles, Marcel P Zwiers, Anbupalam Thalamuthu, Peter R Schofield, Nelson B Freimer, Natalia S Lawrence, and Wayne Drevets and. The ENIGMA Consortium: large-scale collaborative analyses of neuroimaging and genetic data. Brain Imaging Behav, 8(2):153–82, June 2014. (doi:10.1007/s11682-013-9269-5)

  • Meghna Rajaprakash, M Mallar Chakravarty, Jason P Lerch, and Joanne Rovet. Cortical morphology in children with alcohol-related neurodevelopmental disorder. Brain Behav, 4(1):41–50, January 2014. (doi:10.1002/brb3.191)

  • Armin Raznahan, Phillip W Shaw, Jason P Lerch, Liv S Clasen, Deanna Greenstein, Rebecca Berman, Jon Pipitone, Mallar M Chakravarty, and Jay N Giedd. Longitudinal four-dimensional mapping of subcortical anatomy in human development. Proc. Natl. Acad. Sci. U.S.A., 111(4):1592–7, January 2014. (doi:10.1073/pnas.1316911111)

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2014

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  • Matthijs C van Eede, Jan Scholz, M Mallar Chakravarty, R Mark Henkelman, and Jason P Lerch. Mapping registration sensitivity in MR mouse brain images.Neuroimage, 82:226–36, November 2013. (doi:10.1016/j.neuroimage.2013.06.004)

  • M Mallar Chakravarty, Patrick Steadman, Matthijs C van Eede, Rebecca D Calcott, Victoria Gu, Philip Shaw, Armin Raznahan, D Louis Collins, and Jason P Lerch. Performing label-fusion-based segmentation using multiple automatically generated templates. Hum Brain Mapp, 34(10):2635–54, October 2013. (doi:10.1002/hbm.22092)

  • Klára Marečková, M Mallar Chakravarty, Mei Huang, Claire Lawrence, Gabriel Leonard, Michel Perron, Bruce G Pike, Louis Richer, Suzanne Veillette, Zdenka Pausova, and Tomáš Paus. Does skull shape mediate the relationship between objective features and subjective impressions about the face? Neuroimage, 79:234–40, October 2013. (doi:10.1016/j.neuroimage.2013.04.110)

  • Arash Nazeri, M Mallar Chakravarty, Daniel Felsky, Nancy J Lobaugh, Tarek K Rajji, Benoit H Mulsant, and Aristotle N Voineskos. Alterations of superficial white matter in schizophrenia and relationship to cognitive performance.Neuropsychopharmacology, 38(10):1954–62, September 2013. (doi:10.1038/npp.2013.93)

  • Aristotle N Voineskos, Daniel Felsky, Natasa Kovacevic, Arun K Tiwari, Clement Zai, M Mallar Chakravarty, Nancy J Lobaugh, Martha E Shenton, Tarek K Rajji, Dielle Miranda, Bruce G Pollock, Benoit H Mulsant, Anthony R McIntosh, and James L Kennedy. Oligodendrocyte genes, white matter tract integrity, and cognition in schizophrenia. Cereb. Cortex, 23(9):2044–57, September 2013. (doi:10.1093/cercor/bhs188)

  • Julie L Winterburn, Jens C Pruessner, Sofia Chavez, Mark M Schira, Nancy J Lobaugh, Aristotle N Voineskos, and M Mallar Chakravarty. A novel in vivo atlas of human hippocampal subfields using high-resolution 3 T magnetic resonance imaging. Neuroimage, 74:254–65, July 2013. (doi:10.1016/j.neuroimage.2013.02.003)

  • Philip Gerretsen, M Mallar Chakravarty, David Mamo, Mahesh Menon, Bruce G Pollock, Tarek K Rajji, and Ariel Graff-Guerrero. Frontotemporoparietal asymmetry and lack of illness awareness in schizophrenia. Hum Brain Mapp, 34(5):1035–43, May 2013. (doi:10.1002/hbm.21490)

  • Melkaye G Melka, Jesse Gillis, Manon Bernard, Michal Abrahamowicz, M Mallar Chakravarty, Gabriel T Leonard, Michel Perron, Louis Richer, Suzanne Veillette, Tobias Banaschewski, Gareth J Barker, Christian Büchel, Patricia Conrod, Herta Flor, Andreas Heinz, Hugh Garavan, Rüdiger Brühl, Karl Mann, Eric Artiges, Anbarasu Lourdusamy, Mark Lathrop, Eva Loth, Yannick Schwartz, Vincent Frouin, Marcella Rietschel, Michael N Smolka, Andreas Ströhle, Jürgen Gallinat, Maren Struve, Eva Lattka, Melanie Waldenberger, Gunter Schumann, Paul Pavlidis, Daniel Gaudet, Tomás Paus, and Zdenka Pausova. FTO, obesity and the adolescent brain. Hum. Mol. Genet., 22(5):1050–8, March 2013. (doi:10.1093/hmg/dds504)

  • Anne L Wheeler, Jason P Lerch, M Mallar Chakravarty, Miriam Friedel, John G Sled, Paul J Fletcher, Sheena A Josselyn, and Paul W Frankland. Adolescent cocaine exposure causes enduring macroscale changes in mouse brain structure. J. Neurosci., 33(5):1797–803a, January 2013. (doi:10.1523/JNEUROSCI.3830-12.2013)

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2013

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  • M Mallar Chakravarty. Multimodal imaging and image analysis techniques for neuromodulation. Int. Rev. Neurobiol., 107:235–52, 2012. (doi:10.1016/B978-0-12-404706-8.00012-7)

  • M Mallar Chakravarty, Daniel Felsky, Maria Tampakeras, Jason P Lerch, Benoit H Mulsant, James L Kennedy, and Aristotle N Voineskos. DISC1 and Striatal Volume: A Potential Risk Phenotype For mental Illness. Front Psychiatry, 3:57, 2012. (doi:10.3389/fpsyt.2012.00057)

  • Tomás Paus, Manon Bernard, M Mallar Chakravarty, George Davey Smith, Jesse Gillis, Anbarasu Lourdusamy, Melkaye G Melka, Gabriel Leonard, Paul Pavlidis, Michel Perron, G Bruce Pike, Louis Richer, Gunter Schumann, Nicholas Timpson, Roberto Toro, Suzanne Veillette, and Zdenka Pausova. KCTD8 gene and brain growth in adverse intrauterine environment: a genome-wide association study.Cereb. Cortex, 22(11):2634–42, November 2012. (doi:10.1093/cercor/bhr350)

  • Michael J Hawrylycz, Ed S Lein, Angela L Guillozet-Bongaarts, Elaine H Shen, Lydia Ng, Jeremy A Miller, Louie N van de Lagemaat, Kimberly A Smith, Amanda Ebbert, Zackery L Riley, Chris Abajian, Christian F Beckmann, Amy Bernard, Darren Bertagnolli, Andrew F Boe, Preston M Cartagena, M Mallar Chakravarty, Mike Chapin, Jimmy Chong, Rachel A Dalley, Barry David Daly, Chinh Dang, Suvro Datta, Nick Dee, Tim A Dolbeare, Vance Faber, David Feng, David R Fowler, Jeff Goldy, Benjamin W Gregor, Zeb Haradon, David R Haynor, John G Hohmann, Steve Horvath, Robert E Howard, Andreas Jeromin, Jayson M Jochim, Marty Kinnunen, Christopher Lau, Evan T Lazarz, Changkyu Lee, Tracy A Lemon, Ling Li, Yang Li, John A Morris, Caroline C Overly, Patrick D Parker, Sheana E Parry, Melissa Reding, Joshua J Royall, Jay Schulkin, Pedro Adolfo Sequeira, Clifford R Slaughterbeck, Simon C Smith, Andy J Sodt, Susan M Sunkin, Beryl E Swanson, Marquis P Vawter, Derric Williams, Paul Wohnoutka, H Ronald Zielke, Daniel H Geschwind, Patrick R Hof, Stephen M Smith, Christof Koch, Seth G N Grant, and Allan R Jones. An anatomically comprehensive atlas of the adult human brain transcriptome. Nature, 489(7416):391–399, September 2012. (doi:10.1038/nature11405)

  • Fan Liu, Fedde van der Lijn, Claudia Schurmann, Gu Zhu, M Mallar Chakravarty, Pirro G Hysi, Andreas Wollstein, Oscar Lao, Marleen de Bruijne, M Arfan Ikram, Aad van der Lugt, Fernando Rivadeneira, André G Uitterlinden, Albert Hofman, Wiro J Niessen, Georg Homuth, Greig de Zubicaray, Katie L McMahon, Paul M Thompson, Amro Daboul, Ralf Puls, Katrin Hegenscheid, Liisa Bevan, Zdenka Pausova, Sarah E Medland, Grant W Montgomery, Margaret J Wright, Carol Wicking, Stefan Boehringer, Timothy D Spector, Tomáš Paus, Nicholas G Martin, Reiner Biffar, and Manfred Kayser. A genome-wide association study identifies five loci influencing facial morphology in Europeans. PLoS Genet., 8(9):e1002932, September 2012. (doi:10.1371/journal.pgen.1002932)

  • Till Sprenger, Christian L Seifert, Michael Valet, Anna P Andreou, Annette Foerschler, Claus Zimmer, D Louis Collins, Peter J Goadsby, Thomas R Tölle, and M Mallar Chakravarty. Assessing the risk of central post-stroke pain of thalamic origin by lesion mapping. Brain, 135(Pt 8):2536–45, August 2012. (doi:10.1093/brain/aws153)

  • Joel Aanerud, Per Borghammer, M Mallar Chakravarty, Kim Vang, Anders B Rodell, Kristjana Y Jónsdottir, Arne Møller, Mahmoud Ashkanian, Manouchehr S Vafaee, Peter Iversen, Peter Johannsen, and Albert Gjedde. Brain energy metabolism and blood flow differences in healthy aging. J. Cereb. Blood Flow Metab., 32(7):1177–87, July 2012. (doi:10.1038/jcbfm.2012.18)

  • Per Borghammer, Søren B Hansen, Carsten Eggers, Mallar Chakravarty, Kim Vang, Joel Aanerud, Rüdiger Hilker, Wolf-Dieter Heiss, Anders Rodell, Ole L Munk, David Keator, and Albert Gjedde. Glucose metabolism in small subcortical structures in Parkinson's disease. Acta Neurol. Scand., 125(5):303–10, May 2012. (doi:10.1111/j.1600-0404.2011.01556.x)

  • Rikke B Dalby, Jesper Frandsen, M Mallar Chakravarty, Jamila Ahdidan, Leif Sørensen, Raben Rosenberg, Leif Østergaard, and Poul Videbech. Correlations between Stroop task performance and white matter lesion measures in late-onset major depression. Psychiatry Res, 202(2):142–9, May 2012. (doi:10.1016/j.pscychresns.2011.12.009)

  • Jason L Stein, Sarah E Medland, Alejandro Arias Vasquez, Derrek P Hibar, Rudy E Senstad, Anderson M Winkler, Roberto Toro, Katja Appel, Richard Bartecek, Ørjan Bergmann, Manon Bernard, Andrew A Brown, Dara M Cannon, M Mallar Chakravarty, Andrea Christoforou, Martin Domin, Oliver Grimm, Marisa Hollinshead, Avram J Holmes, Georg Homuth, Jouke-Jan Hottenga, Camilla Langan, Lorna M Lopez, Narelle K Hansell, Kristy S Hwang, Sungeun Kim, Gonzalo Laje, Phil H Lee, Xinmin Liu, Eva Loth, Anbarasu Lourdusamy, Morten Mattingsdal, Sebastian Mohnke, Susana Muñoz Maniega, Kwangsik Nho, Allison C Nugent, Carol O'Brien, Martina Papmeyer, Benno Pütz, Adaikalavan Ramasamy, Jerod Rasmussen, Mark Rijpkema, Shannon L Risacher, J Cooper Roddey, Emma J Rose, Mina Ryten, Li Shen, Emma Sprooten, Eric Strengman, Alexander Teumer, Daniah Trabzuni, Jessica Turner, Kristel van Eijk, Theo G M van Erp, Marie-Jose van Tol, Katharina Wittfeld, Christiane Wolf, Saskia Woudstra, Andre Aleman, Saud Alhusaini, Laura Almasy, Elisabeth B Binder, David G Brohawn, Rita M Cantor, Melanie A Carless, Aiden Corvin, Michael Czisch, Joanne E Curran, Gail Davies, Marcio A A de Almeida, Norman Delanty, Chantal Depondt, Ravi Duggirala, Thomas D Dyer, Susanne Erk, Jesen Fagerness, Peter T Fox, Nelson B Freimer, Michael Gill, Harald H H Göring, Donald J Hagler, David Hoehn, Florian Holsboer, Martine Hoogman, Norbert Hosten, Neda Jahanshad, Matthew P Johnson, Dalia Kasperaviciute, Jack W Kent, Peter Kochunov, Jack L Lancaster, Stephen M Lawrie, David C Liewald, René Mandl, Mar Matarin, Manuel Mattheisen, Eva Meisenzahl, Ingrid Melle, Eric K Moses, Thomas W Mühleisen, Matthias Nauck, Markus M Nöthen, Rene L Olvera, Massimo Pandolfo, G Bruce Pike, Ralf Puls, Ivar Reinvang, Miguel E Rentería, Marcella Rietschel, Joshua L Roffman, Natalie A Royle, Dan Rujescu, Jonathan Savitz, Hugo G Schnack, Knut Schnell, Nina Seiferth, Colin Smith, Vidar M Steen, Maria C Valdés Hernández, Martijn Van den Heuvel, Nic J van der Wee, Neeltje E M Van Haren, Joris A Veltman, Henry Völzke, Robert Walker, Lars T Westlye, Christopher D Whelan, Ingrid Agartz, Dorret I Boomsma, Gianpiero L Cavalleri, Anders M Dale, Srdjan Djurovic, Wayne C Drevets, Peter Hagoort, Jeremy Hall, Andreas Heinz, Clifford R Jack, Tatiana M Foroud, Stephanie Le Hellard, Fabio Macciardi, Grant W Montgomery, Jean Baptiste Poline, David J Porteous, Sanjay M Sisodiya, John M Starr, Jessika Sussmann, Arthur W Toga, Dick J Veltman, Henrik Walter, Michael W Weiner, , , , , Joshua C Bis, M Arfan Ikram, Albert V Smith, Vilmundur Gudnason, Christophe Tzourio, Meike W Vernooij, Lenore J Launer, Charles DeCarli, Sudha Seshadri, , Ole A Andreassen, Liana G Apostolova, Mark E Bastin, John Blangero, Han G Brunner, Randy L Buckner, Sven Cichon, Giovanni Coppola, Greig I de Zubicaray, Ian J Deary, Gary Donohoe, Eco J C de Geus, Thomas Espeseth, Guillén Fernández, David C Glahn, Hans J Grabe, John Hardy, Hilleke E Hulshoff Pol, Mark Jenkinson, René S Kahn, Colm McDonald, Andrew M McIntosh, Francis J McMahon, Katie L McMahon, Andreas Meyer-Lindenberg, Derek W Morris, Bertram Müller-Myhsok, Thomas E Nichols, Roel A Ophoff, Tomas Paus, Zdenka Pausova, Brenda W Penninx, Steven G Potkin, Philipp G Sämann, Andrew J Saykin, Gunter Schumann, Jordan W Smoller, Joanna M Wardlaw, Michael E Weale, Nicholas G Martin, Barbara Franke, Margaret J Wright, and Paul M Thompson and. Identification of common variants associated with human hippocampal and intracranial volumes. Nat. Genet., 44(5):552–61, April 2012. (doi:10.1038/ng.2250)

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2012

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  • M Mallar Chakravarty, Rosanne Aleong, Gabriel Leonard, Michel Perron, G Bruce Pike, Louis Richer, Suzanne Veillette, Zdenka Pausova, and Tomáš Paus. Automated analysis of craniofacial morphology using magnetic resonance images. PLoS ONE, 6(5):e20241, 2011. (doi:10.1371/journal.pone.0020241)

  • Abbas F Sadikot, M Mallar Chakravarty, Gilles Bertrand, Vladimir V Rymar, Fahd Al-Subaie, and D Louis Collins. Creation of Computerized 3D MRI-Integrated Atlases of the Human Basal Ganglia and Thalamus. Front Syst Neurosci, 5:71, 2011. (doi:10.3389/fnsys.2011.00071)

  • Klára Marečková, Zohar Weinbrand, M Mallar Chakravarty, Claire Lawrence, Rosanne Aleong, Gabriel Leonard, Michel Perron, G Bruce Pike, Louis Richer, Suzanne Veillette, Zdenka Pausova, and Tomáš Paus. Testosterone-mediated sex differences in the face shape during adolescence: subjective impressions and objective features. Horm Behav, 60(5):681–90, November 2011. (doi:10.1016/j.yhbeh.2011.09.004)

  • Stephen Frey, Deepak N Pandya, M Mallar Chakravarty, Lara Bailey, Michael Petrides, and D Louis Collins. An MRI based average macaque monkey stereotaxic atlas and space (MNI monkey space). Neuroimage, 55(4):1435–42, April 2011. (doi:10.1016/j.neuroimage.2011.01.040)

  • Anne M Landau, M Mallar Chakravarty, Campbell M Clark, Athanasios P Zis, and Doris J Doudet. Electroconvulsive therapy alters dopamine signaling in the striatum of non-human primates. Neuropsychopharmacology, 36(2):511–8, January 2011. (doi:10.1038/npp.2010.182)

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2011

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  • Frederikke Rosendal, M Mallar Chakravarty, Niels Sunde, Anders Rodell, Kristjana Y Jonsdottir, Michael Pedersen, Carsten Bjarkam, and Jens Christian Sørensen. Defining the intercommissural plane and stereotactic coordinates for the Basal Ganglia in the Göttingen minipig brain. Stereotact Funct Neurosurg, 88(3):138–46, 2010. (doi:10.1159/000303526)

  • Rikke Beese Dalby, Jesper Frandsen, M Mallar Chakravarty, Jamila Ahdidan, Leif Sørensen, Raben Rosenberg, Poul Videbech, and Leif Ostergaard. Depression severity is correlated to the integrity of white matter fiber tracts in late-onset major depression. Psychiatry Res, 184(1):38–48, October 2010. (doi:10.1016/j.pscychresns.2010.06.008)

  • Ann M Miller, Ravi Bansal, Xuejun Hao, Juan Pablo Sanchez-Pena, Loren J Sobel, Jun Liu, Dongrong Xu, Hongtu Zhu, M Mallar Chakravarty, Kathleen Durkin, Iliyan Ivanov, Kerstin J Plessen, Christoph B Kellendonk, and Bradley S Peterson. Enlargement of thalamic nuclei in Tourette syndrome. Arch. Gen. Psychiatry, 67(9):955–64, September 2010. (doi:10.1001/archgenpsychiatry.2010.102)

  • Per Borghammer, Mallar Chakravarty, Kristjana Yr Jonsdottir, Noriko Sato, Hiroshi Matsuda, Kengo Ito, Yutaka Arahata, Takashi Kato, and Albert Gjedde. Cortical hypometabolism and hypoperfusion in Parkinson's disease is extensive: probably even at early disease stages. Brain Struct Funct, 214(4):303–17, May 2010. (doi:10.1007/s00429-010-0246-0)

  • Iliyan Ivanov, Ravi Bansal, Xuejun Hao, Hongtu Zhu, Cristoph Kellendonk, Loren Miller, Juan Sanchez-Pena, Ann M Miller, M Mallar Chakravarty, Kristin Klahr, Kathleen Durkin, Laurence L Greenhill, and Bradley S Peterson. Morphological abnormalities of the thalamus in youths with attention deficit hyperactivity disorder. Am J Psychiatry, 167(4):397–408, April 2010. (doi:10.1176/appi.ajp.2009.09030398)

  • Sandra E Leh, Alain Ptito, Marc Schönwiesner, Mallar M Chakravarty, and Kathy T Mullen. Blindsight mediated by an S-cone-independent collicular pathway: an fMRI study in hemispherectomized subjects. J Cogn Neurosci, 22(4):670–82, April 2010. (doi:10.1162/jocn.2009.21217)

  • Mike Hawrylycz, Amy Bernard, Chris Lau, Susan M Sunkin, M Mallar Chakravarty, Ed S Lein, Allan R Jones, and Lydia Ng. Areal and laminar differentiation in the mouse neocortex using large scale gene expression data.Methods, 50(2):113–21, February 2010. (doi:10.1016/j.ymeth.2009.09.005)

  • Lydia Ng, Chris Lau, Susan M Sunkin, Amy Bernard, M Mallar Chakravarty, Ed S Lein, Allan R Jones, and Michael Hawrylycz. Surface-based mapping of gene expression and probabilistic expression maps in the mouse cortex. Methods, 50(2):55–62, February 2010. (doi:10.1016/j.ymeth.2009.10.001)

  • Sune N Jespersen, Carsten R Bjarkam, Jens R Nyengaard, M Mallar Chakravarty, Brian Hansen, Thomas Vosegaard, Leif Østergaard, Dmitriy Yablonskiy, Niels Chr Nielsen, and Peter Vestergaard-Poulsen. Neurite density from magnetic resonance diffusion measurements at ultrahigh field: comparison with light microscopy and electron microscopy. Neuroimage, 49(1):205–16, January 2010. (doi:10.1016/j.neuroimage.2009.08.053)

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2010

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  • Frederikke Rosendal, Jesper Frandsen, M Mallar Chakravarty, Carsten Reidies Bjarkam, Michael Pedersen, Ryan Sangill, and Jens Christian Sørensen. New surgical technique reduces the susceptibility artefact at air-tissue interfaces on in vivo cerebral MRI in the Göttingen minipig. Brain Res. Bull., 80(6):403–7, December 2009. (doi:10.1016/j.brainresbull.2009.08.012)

  • M Mallar Chakravarty, Abbas F Sadikot, Jürgen Germann, Pierre Hellier, Gilles Bertrand, and D Louis Collins. Comparison of piece-wise linear, linear, and nonlinear atlas-to-patient warping techniques: analysis of the labeling of subcortical nuclei for functional neurosurgical applications. Hum Brain Mapp, 30(11):3574–95, November 2009. (doi:10.1002/hbm.20780)

  • M Mallar Chakravarty, Scott Broadbent, Pedro Rosa-Neto, Casey M Lambert, and D Louis Collins. Design, construction, and validation of an MRI-compatible vibrotactile stimulator intended for clinical use. J. Neurosci. Methods, 184(1):129–35, October 2009. (doi:10.1016/j.jneumeth.2009.07.018)

  • M Mallar Chakravarty and Peter Vuust. Musical morphology. Ann. N. Y. Acad. Sci., 1169:79–83, July 2009. (doi:10.1111/j.1749-6632.2009.04780.x)

  • M Mallar Chakravarty, Pedro Rosa-Neto, Scott Broadbent, Alan C Evans, and D Louis Collins. Robust S1, S2, and thalamic activations in individual subjects with vibrotactile stimulation at 1.5 and 3.0 T. Hum Brain Mapp, 30(4):1328–37, April 2009. (doi:10.1002/hbm.20598)

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2009

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  • Sandra E Leh, M Mallar Chakravarty, and Alain Ptito. The connectivity of the human pulvinar: a diffusion tensor imaging tractography study. Int J Biomed Imaging, 2008:789539, 2008. (doi:10.1155/2008/789539)

  • M Mallar Chakravarty, Abbas F Sadikot, Jürgen Germann, Gilles Bertrand, and D Louis Collins. Towards a validation of atlas warping techniques. Med Image Anal, 12(6):713–26, December 2008. (doi:10.1016/j.media.2008.04.003)

  • Simone P Zehntner, M Mallar Chakravarty, Rozica J Bolovan, Christopher Chan, and Barry J Bedell. Synergistic tissue counterstaining and image segmentation techniques for accurate, quantitative immunohistochemistry. J. Histochem. Cytochem., 56(10):873–80, October 2008. (doi:10.1369/jhc.2008.950345)

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2008

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  • Sandra E Leh, Alain Ptito, M Mallar Chakravarty, and Antonio P Strafella. Fronto-striatal connections in the human brain: a probabilistic diffusion tractography study. Neurosci. Lett., 419(2):113–8, May 2007. (doi:10.1016/j.neulet.2007.04.049)

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2007

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  • M Mallar Chakravarty, Abbas F Sadikot, Sanjay Mongia, Gilles Bertrand, and D Louis Collins. Towards a multi-modal atlas for neurosurgical planning. Med Image Comput Comput Assist Interv, 9(Pt 2):389–96, 2006.

  • M Mallar Chakravarty, Gilles Bertrand, Charles P Hodge, Abbas F Sadikot, and D Louis Collins. The creation of a brain atlas for image guided neurosurgery using serial histological data. Neuroimage, 30(2):359–76, April 2006. (doi:10.1016/j.neuroimage.2005.09.041)

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2006

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  • M Mallar Chakravarty, Abbas F Sadikot, Jurgen Germann, Gilles Bertrand, and D Louis Collins. Anatomical and electrophysiological validation of an atlas for neurosurgical planning. Med Image Comput Comput Assist Interv, 8(Pt 2):394–401, 2005.

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2005

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